covid19_research

Collection of jupyter notebooks and python scripts related to COVID-19 research.

Notes on usage

This git repository uses submodules to link to different versions of our toolbox. They can be easily imported without haveing to be installed via pip.

Clone with the submodules:

git clone --recurse-submodules --remote-submodules git@github.com:Priesemann-Group/covid19_research.git

Import python module:

import sys
sys.path.append("../toolbox/[version]")
import covid19_inference as cov19

Add a new version of the toolbox as submodule via terminal:

cd toolbox
git submodule add -b [branch of version] git@github.com:Priesemann-Group/covid19_inference.git [folder name for submodule]