Analysis

Code for common analysis

Create/find path locations

plab.locations.(location)

• server_data_path: server location
• ports/local workflow/github: used in rigging code

plab.locations.filename(drive,animal,rec_day,rec_time,filepart1,...,filepartN): construct lab filename

Finding recordings

plab.find_recordings(animal,day,workflow): find recordings (specific or general) and recording modalities

Widefield

Call functions from plab.wf.(function):

batch_widefield_preprocess: run on widefield computer after experiment, calls preprocess_widefield for all local data

hemo_correct(U_neuro,V_neuro,t_neuro,U_hemo,V_hemo,t_hemo): apply hemodynamic correction from alternating blue/violet

svd2px(U,V): reconstruct pixels from SVD components

svd_dff(U,V,mean_image): make deltaF/F V from SVD components

change_U(U,V,newU): convert V from one set of U's to another