Add functions that can extract and update phenological status based on MODIS data and enable monthly SDA #3915
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: renderbook | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| tags: | |
| - '*' | |
| pull_request: | |
| merge_group: | |
| jobs: | |
| bookdown: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| container: | |
| image: pecan/depends:R4.1 | |
| steps: | |
| # checkout source code | |
| - uses: actions/checkout@v4 | |
| # install bookdown | |
| - name: Install bookdown | |
| run: | | |
| Rscript \ | |
| -e 'repos <- c(getOption("repos"), sub(r"(\d{4}-\d{2}-\d{2})", "latest", getOption("repos")))' \ | |
| -e 'remotes::install_version("bookdown", ">= 0.31", dependencies = TRUE, upgrade = FALSE, repos = repos)' | |
| # copy files | |
| - name: copy extfiles | |
| run: | | |
| mkdir -p book_source/extfiles | |
| cp -f documentation/tutorials/01_Demo_Basic_Run/extfiles/* book_source/extfiles | |
| # compile PEcAn code | |
| - name: build needed modules | |
| run: | | |
| R CMD INSTALL base/logger | |
| R CMD INSTALL base/remote | |
| R CMD INSTALL base/utils | |
| # render book | |
| - name: Render Book | |
| run: | | |
| cd book_source | |
| Rscript -e 'options(bookdown.render.file_scope=FALSE); bookdown::render_book("index.Rmd", "bookdown::gitbook")' | |
| # save artifact | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: pecan-documentation | |
| path: book_source/_book/ | |
| # download documentation repo | |
| - name: Checkout documentation repo | |
| if: github.event_name == 'push' | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: ${{ github.repository_owner }}/pecan-documentation | |
| path: pecan-documentation | |
| token: ${{ secrets.GH_PAT }} | |
| # upload new documentation | |
| - name: publish to github | |
| if: github.event_name == 'push' | |
| run: | | |
| git config --global user.email "pecanproj@gmail.com" | |
| git config --global user.name "GitHub Documentation Robot" | |
| export VERSION=$(echo $GITHUB_REF | sed 's,.*/,,' ) | |
| cd pecan-documentation | |
| mkdir -p $VERSION | |
| rsync -a --delete ../book_source/_book/ ${VERSION}/ | |
| git add --all * | |
| git commit -m "Build book from pecan revision ${GITHUB_SHA}" || true | |
| git push -q origin master |