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Adding functions and scripts for downloading, extracting, and processing observations, initial conditions, land cover types, ERA5 drivers for anchor sites within NA. #4936

Adding functions and scripts for downloading, extracting, and processing observations, initial conditions, land cover types, ERA5 drivers for anchor sites within NA.

Adding functions and scripts for downloading, extracting, and processing observations, initial conditions, land cover types, ERA5 drivers for anchor sites within NA. #4936

Workflow file for this run

name: Docker
# initially we would us on: [release] as well, the problem is that
# the code in clowder would not know what branch the code is in,
# and would not set the right version flags.
# This will run when:
# - when new code is pushed to master/develop to push the tags
# latest and develop
# - when a pull request is created and updated to make sure the
# Dockerfile is still valid.
# To be able to push to dockerhub, this expects the following
# secrets to be set in the project:
# - DOCKERHUB_USERNAME : username that can push to the org
# - DOCKERHUB_PASSWORD : password asscoaited with the username
on:
push:
branches:
- master
- develop
pull_request:
merge_group:
issue_comment:
types:
- created
# Certain actions will only run when this is the master repo.
env:
MASTER_REPO: PecanProject/pecan
DOCKERHUB_ORG: pecan
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
jobs:
docker:
if: github.event_name != 'issue_comment' || startsWith(github.event.comment.body, '/build')
runs-on: ubuntu-latest
steps:
- name: Work around https://github.com/actions/checkout/issues/766
run: git config --global --add safe.directory "$GITHUB_WORKSPACE"
- uses: actions/checkout@v4
with:
set-safe-directory: false
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
with:
driver: docker
buildkitd-flags: --debug
install: true
# calculate some variables that are used later
- name: get version tag
run: |
BRANCH=${GITHUB_REF##*/}
echo "GITHUB_BRANCH=${BRANCH}" >> $GITHUB_ENV
if [ "$BRANCH" == "master" ]; then
version="$(awk '/Version:/ { print $2 }' base/all/DESCRIPTION)"
tags="latest"
oldversion=""
while [ "${oldversion}" != "${version}" ]; do
oldversion="${version}"
tags="${tags},${version}"
version=${version%.*}
done
echo "PECAN_VERSION=$(awk '/Version:/ { print $2 }' base/all/DESCRIPTION)" >> $GITHUB_ENV
echo "PECAN_TAGS=${tags}" >> $GITHUB_ENV
elif [ "$BRANCH" == "develop" ]; then
echo "PECAN_VERSION=develop" >> $GITHUB_ENV
echo "PECAN_TAGS=develop" >> $GITHUB_ENV
else
echo "PECAN_VERSION=develop" >> $GITHUB_ENV
echo "PECAN_TAGS=develop" >> $GITHUB_ENV
fi
# use shell script to build, there is some complexity in this
- name: create images
run: ./docker.sh -i github
env:
PECAN_GIT_CHECKSUM: ${{ github.sha }}
PECAN_GIT_BRANCH: ${GITHUB_BRANCH}
VERSION: ${{ env.PECAN_VERSION }}
# push all images to github
- name: Publish to GitHub
if: github.event_name == 'push' && github.repository == env.MASTER_REPO
run: |
echo "${INPUT_PASSWORD}" | docker login -u ${INPUT_USERNAME} --password-stdin ${INPUT_REGISTRY}
repo=$(echo ${{ github.repository_owner }} | tr 'A-Z' 'a-z')
for image in $(docker image ls pecan/*:github --format "{{ .Repository }}"); do
for v in ${PECAN_TAGS}; do
docker tag ${image}:github ${INPUT_REGISTRY}/${repo}/${image#pecan/}:${v}
docker push ${INPUT_REGISTRY}/${repo}/${image#pecan/}:${v}
done
done
docker logout
env:
INPUT_REGISTRY: ghcr.io
INPUT_USERNAME: ${{ secrets.GHCR_USERNAME }}
INPUT_PASSWORD: ${{ secrets.GHCR_PASSWORD }}
# push all images to dockerhub
- name: Publish to DockerHub
if: github.event_name == 'push' && github.repository == env.MASTER_REPO
run: |
echo "${INPUT_PASSWORD}" | docker login -u ${INPUT_USERNAME} --password-stdin
for image in $(docker image ls pecan/*:github --format "{{ .Repository }}"); do
for v in ${PECAN_TAGS}; do
docker tag ${image}:github ${{ env.DOCKERHUB_ORG }}/${image#pecan/}:${v}
docker push ${{ env.DOCKERHUB_ORG }}/${image#pecan/}:${v}
done
done
docker logout
env:
INPUT_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }}
INPUT_PASSWORD: ${{ secrets.DOCKERHUB_PASSWORD }}