build: Test Models Against the Full Docker Stack #2
Workflow file for this run
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| name: Docker-Stack-Test | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| - Docker-Stack-Testing | |
| tags: | |
| - '*' | |
| pull_request: | |
| merge_group: | |
| issue_comment: | |
| types: | |
| - created | |
| env: | |
| R_LIBS_USER: /usr/local/lib/R/site-library | |
| LC_ALL: en_US.UTF-8 | |
| NCPUS: 2 | |
| PGHOST: postgres | |
| CI: true | |
| jobs: | |
| # ---------------------------------------------------------------------- | |
| # DOCKER STACK TESTS | |
| # ---------------------------------------------------------------------- | |
| Stack-Test: | |
| if: github.event_name != 'issue_comment' || startsWith(github.event.comment.body, '/build') | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| name: | |
| - sipnet_r136 | |
| include: | |
| - name: sipnet_r136 | |
| modelID: "1000000014" | |
| siteID: "772" | |
| siteName: "Niwot Ridge Forest/LTER NWT1 (US-NR1)" | |
| pftName: "temperate.coniferous" | |
| metData: "AmerifluxLBL.SIPNET" | |
| #Add more models below in the above format | |
| services: | |
| postgres: | |
| image: mdillon/postgis:9.5 | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| container: | |
| image: pecan/depends | |
| steps: | |
| # checkout source code | |
| - name: work around https://github.com/actions/checkout/issues/766 | |
| run: git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| - uses: actions/checkout@v3 | |
| with: | |
| set-safe-directory: false | |
| - name: Set up Docker Compose | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -y install docker-compose | |
| - name: Build and run containers | |
| run: | | |
| docker system prune --all --force | |
| docker-compose up -d postgres | |
| docker run --rm --network pecan_pecan pecan/db | |
| docker-compose run bety user guestuser guestuser "Guest User" guestuser@example.com 4 4 | |
| docker-compose run bety user carya illinois "Carya Demo User" carya@example.com 1 1 | |
| docker run --rm --network pecan_pecan --volume pecan_pecan:/data --env FQDN=docker pecan/data:develop | |
| cp docker/env.example .env | |
| echo "COMPOSE_PROJECT_NAME=pecan" >> .env | |
| echo "PECAN_VERSION=develop" >> .env | |
| docker-compose up -d | |
| - name: Wait for services to start | |
| run: | | |
| docker-compose ps | |
| sleep 20 # Adjust the duration as needed | |
| docker-compose ps | |
| sleep 20 | |
| docker-compose ps | |
| sleep 20 | |
| - name: Display running containers | |
| run: | | |
| docker-compose ps | |
| docker network ls | |
| docker network inspect bridge | |
| # run SIPNET test | |
| # run SIPNET test | |
| - name: Run cURL command | |
| run: | | |
| curl -v -L -X POST -H "Host: pecan.localhost" \ | |
| -F 'hostname=docker' \ | |
| -F 'modelid=${{ matrix.modelID }}' \ | |
| -F 'sitegroupid=1' \ | |
| -F 'siteid=${{ matrix.siteID }}' \ | |
| -F 'sitename=${{ matrix.siteName }}' \ | |
| -F 'pft[]=${{ matrix.pftName }}' \ | |
| -F 'start=2002/01/01' \ | |
| -F 'end=2005/12/31' \ | |
| -F 'input_met=${{ matrix.metData }}' \ | |
| -F 'email=' \ | |
| -F 'notes=' \ | |
| 'http://172.17.0.1/pecan/04-runpecan.php' | |
| sleep 120 | |
| curl -v -L -H "Host: pecan.localhost" \ | |
| 'http://172.17.0.1/pecan/historylist.php' | |