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The Graphical Pathway Markup Language (GPML)

Versions

Description, files and documentation for all GPML schema versions.

Schema version Documentation Date
GPML2021.xsd Doc, Release notes upcoming (July 2021)
GPML2017.xsd Doc not released
GPML2013a.xsd released in 2013 and introduced on WikiPathways on 8 July 2013
GPML2010a.xsd released in 2010
GPML2008a.xsd released 2008
GPML2007.xsd original schema

Testing and examples

Directory "test" in each schema directory contains a variety of GPML files to serve as an acid test for GPML parsing and handling libraries (inspired by csv-spectrum).

The GPML2013a-fuller schema was never used in PathVisio-Java, but it more accurately and fully reflects the GPML used from 2013 to 2017 than does the GPML2013a schema. Both the GPML2013a and GPML2013a-fuller schemas attempt to describe the exact same GPML.

Feature requests

Developers:

  • Martina Kutmon
  • Finterly Hu
  • Anders Riutta
  • Alex Pico
  • Egon Willighagen

Former developers:

  • Martijn van Iersel
  • Thomas Kelder
  • Saurabh Kumar