This is the repository for the research paper Sensitivity of phytoplankton primary production estimates to available irradiance under heterogeneous sea-ice condition which can be found here: https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2019JC015007
Please cite the paper as:
Massicotte, P., Peeken, I., Katlein, C., Flores, H., Huot, Y., Castellani, G., et al. (2019). Sensitivity of phytoplankton primary production estimates to available irradiance under heterogeneous sea ice conditions. Journal of Geophysical Research: Oceans, 124. https://doi.org/10.1029/2019JC015007
The data is available on Pangaea web site:
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SUIT data (submitted to Pangaea)
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Incident radiation (https://doi.pangaea.de/10.1594/PANGAEA.849663)
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Station list (https://doi.pangaea.de/10.1594/PANGAEA.848841)
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Photosynthetic parameters (https://doi.org/10.1594/PANGAEA.899842)
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Sea-ice/snow thickness (https://doi.pangaea.de/10.1594/PANGAEA.897958)
R 3.6.0 has been used to for this project. The script file R/main.R contains the recipes to reproduce all the analyses and figures of the article.
Print version information about R, the OS and attached or loaded packages.
> sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Linux Mint 19.1
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 LC_MONETARY=en_CA.UTF-8
[6] LC_MESSAGES=en_CA.UTF-8 LC_PAPER=en_CA.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] xtable_1.8-2 pbmcapply_1.4.1 data.table_1.12.2 furrr_0.1.0.9002 future_1.12.0 readxl_1.3.1 multidplyr_0.0.0.9000
[8] sf_0.7-4 extrafont_0.17 feather_0.3.3 forcats_0.4.0 stringr_1.4.0 dplyr_0.8.0.1 purrr_0.3.2
[15] readr_1.3.1 tidyr_0.8.3.9000 tibble_2.1.1 ggplot2_3.1.1 tidyverse_1.2.1 MASS_7.3-51.1
loaded via a namespace (and not attached):
[1] nlme_3.1-139 fs_1.3.1 usethis_1.5.0 lubridate_1.7.4 devtools_2.0.2 httr_1.4.0 rprojroot_1.3-2 tools_3.6.0
[9] backports_1.1.4 R6_2.4.0 KernSmooth_2.23-15 DBI_1.0.0 lazyeval_0.2.2 colorspace_1.4-1 withr_2.1.2 tidyselect_0.2.5
[17] prettyunits_1.0.2 processx_3.3.1 curl_3.3 compiler_3.6.0 git2r_0.24.0 extrafontdb_1.0 cli_1.1.0 rvest_0.3.3
[25] xml2_1.2.0 desc_1.2.0 scales_1.0.0 classInt_0.3-3 callr_3.2.0 digest_0.6.18 rmarkdown_1.12 pkgconfig_2.0.2
[33] htmltools_0.3.6 sessioninfo_1.1.1 styler_1.1.1 rlang_0.3.4.9003 rstudioapi_0.10 generics_0.0.2 jsonlite_1.6 magrittr_1.5
[41] Rcpp_1.0.1 munsell_0.5.0 clipr_0.6.0 stringi_1.4.3 yaml_2.2.0 pkgbuild_1.0.2 plyr_1.8.4 grid_3.6.0
[49] listenv_0.7.0 crayon_1.3.4 lattice_0.20-38 haven_2.1.0 hms_0.4.2 zeallot_0.1.0 knitr_1.22 ps_1.3.0
[57] pillar_1.3.1 datapasta_3.0.0 pkgload_1.0.2 codetools_0.2-16 clisymbols_1.2.0 glue_1.3.1 packrat_0.5.0 evaluate_0.13
[65] remotes_2.0.2 modelr_0.1.4 vctrs_0.1.0.9003 testthat_2.1.1 Rttf2pt1_1.3.7 cellranger_1.1.0 gtable_0.3.0 rematch2_2.0.1
[73] assertthat_0.2.1 xfun_0.6 broom_0.5.2 e1071_1.7-1 class_7.3-15 tinytex_0.12 memoise_1.1.0 units_0.6-3
[81] globals_0.12.4 here_0.1 Please note that the 'transsiz' project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.