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Oshlack

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  1. splatter splatter Public

    Simple simulation of single-cell RNA sequencing data

    R 209 55

  2. JAFFA JAFFA Public

    JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

    C++ 77 20

  3. Corset Corset Public

    Software for clustering de novo assembled transcripts and counting overlapping reads

    C++ 67 18

  4. Lace Lace Public

    Building SuperTranscripts: A linear representation of transcriptome data

    Python 65 19

  5. STRetch STRetch Public

    Method for detecting STR expansions from short-read sequencing data

    Python 61 16

  6. Clinker Clinker Public

    Gene Fusion Visualiser

    Python 50 12

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