Update peptides_proteins.rst #473

	name: Build and Test code in notebooks

	on:
	pull_request:
	branches:
	- master

	jobs:

	build-test:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v3

	- uses: actions/setup-python@v4
	with:
	python-version: '3.10' # Version range or exact version of a Python version to use, using SemVer's version range syntax

	- name: Get changed files
	id: changed-files
	uses: tj-actions/changed-files@v41
	with:
	dir_names_max_depth: 0
	files: \|
	docs/source/*.rst
	docs/source/*/.rst
	!docs/source/**/_templates

	- uses: r-lib/actions/setup-pandoc@v2
	with:
	pandoc-version: '3.1.2'

	# - uses: actions/setup-python@v4
	# with:
	# python-version: '3.7' # Version range or exact version of a Python version to use, using SemVer's version range syntax

	- name: Installing Dependencies
	run: \|
	python3 -m pip install --upgrade pip
	python3 -m pip install --upgrade pandocfilters jupyter
	python3 -m pip install --upgrade -r requirements.txt


	- name: Generating notebooks
	run: \|
	pushd docs/source
	./generate_ipynb.sh
	popd

	- name: Execute all notebooks generated from modified files
	run: \|
	for file in ${{ steps.changed-files.outputs.all_modified_files }}; do
	jupyter nbconvert --to notebook --inplace --execute ${file%.rst}.ipynb \|\| (echo "${file%.rst}" >> failed_nbs.txt)
	done
	if [ -f "failed_nbs.txt" ]; then
	echo "Some notebooks failed to run. Please check logs."
	cat failed_nbs.txt
	exit 1
	fi

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