IPpiRNAdb_v2

This database is publised at:

Barreñada, O., Larriba, E., Brieño-Enriquez, M.A. et al. piRNA-IPdb: a PIWI-bound piRNAs database to mining NGS sncRNA data and beyond. BMC Genomics 22, 765 (2021). https://doi.org/10.1186/s12864-021-08071-6

The IPpiRNAdb initialy released at:

Larriba, E., del Mazo, J. An integrative piRNA analysis of mouse gametes and zygotes reveals new potential origins and gene regulatory roles. Sci Rep 8, 12832 (2018). https://doi.org/10.1038/s41598-018-31032-1

Downloadable compressed fasta file available at: https://drive.google.com/file/d/1NqSfGcrBSMYLfOyUaJ10djiQem7ZUfWE

Downloadable compressed BED file available at: https://drive.google.com/file/d/1NftShKgHb7ywEVFCI1q6uoQpaZdnGrLz

Script runing order

1. IPdb_generator.sh
2. ReadNormalization.R
3. GetNonHec.R
4. IPdb_hec_labelling.sh

• piRbase_readsExtractor.pl
• piRbase_seq_Extractor.pl