NcHIPert Reformulation #1569
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| name: Build and Check | |
| on: | |
| push: | |
| branches: | |
| - 'master' | |
| pull_request: | |
| branches: | |
| - '*' | |
| jobs: | |
| build-gcc-ubuntu: | |
| name: (ubuntu, apt) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install pre-requisites | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gobject-introspection gir1.2-glib-2.0 libgirepository1.0-dev gcc gfortran pkg-config libglib2.0-dev libgmp3-dev libmpfr-dev libgsl0-dev libfftw3-dev libopenblas-dev libflint-arb-dev libcfitsio-dev libfyaml-dev libnlopt-dev libhdf5-dev gtk-doc-tools libopenmpi-dev | |
| sudo pip install meson ninja pytest pytest-tap numpy | |
| - name: Ensure clear Jupyter Notebooks | |
| uses: ResearchSoftwareActions/EnsureCleanNotebooksAction@1.1 | |
| - name: Configure NumCosmo | |
| run: meson setup build -Dbuildtype=release -Dnumcosmo_py=true -Dgtkdoc=disabled --prefix=/usr || (cat build/meson-logs/meson-log.txt && exit 1) | |
| - name: Building NumCosmo | |
| run: meson compile -C build | |
| - name: Test python examples | |
| run: | | |
| source build/numcosmo_export.sh | |
| cd examples | |
| python example_simple.py | |
| python example_cbe.py | |
| - name: Test example compilation using non-installed library | |
| run: | | |
| source build/numcosmo_export.sh | |
| cd examples | |
| gcc -D_GNU_SOURCE -Wall example_simple.c -o example_simple -lnumcosmo -lgsl -lm $(pkg-config glib-2.0 gobject-2.0 --libs --cflags) | |
| gcc -D_GNU_SOURCE -Wall example_ca.c -o example_ca -lnumcosmo -lgsl -lm $(pkg-config glib-2.0 gobject-2.0 --libs --cflags) | |
| ./example_simple | |
| ./example_ca | |
| - name: Check NumCosmo | |
| run: meson test -C build || (cat build/meson-logs/testlog.txt && exit 1) | |
| - name: Create a NumCosmo tarball | |
| run: meson dist -C build --no-tests | |
| - name: Upload a Build Artifact | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: release | |
| path: build/meson-dist/numcosmo-*.tar.xz | |
| - name: Test example compilation using installed library | |
| run: | | |
| sudo meson install -C build | |
| cd examples | |
| gcc -D_GNU_SOURCE -Wall example_simple.c -o example_simple $(pkg-config numcosmo --libs --cflags) | |
| gcc -D_GNU_SOURCE -Wall example_ca.c -o example_ca $(pkg-config numcosmo --libs --cflags) | |
| ./example_simple | |
| ./example_ca | |
| build-gcc-macos: | |
| name: (macos, brew) | |
| runs-on: macos-latest | |
| env: | |
| CC: gcc-11 | |
| FC: gfortran-11 | |
| F77: gfortran-11 | |
| F90: gfortran-11 | |
| LIBRARY_PATH: /usr/local/lib | |
| LD_LIBRARY_PATH: /usr/local/lib | |
| DYLD_LIBRARY_PATH: /usr/local/lib | |
| CPATH: /usr/local/include | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Brew install pre-requisites | |
| run: | | |
| brew install gobject-introspection gsl gmp mpfr fftw cfitsio libfyaml nlopt gfortran gtk-doc glib openblas | |
| - name: Pip install pre-requisites | |
| run: | | |
| pip3 install meson ninja pytest pytest-tap numpy pygobject | |
| - name: Ensure clear Jupyter Notebooks | |
| uses: ResearchSoftwareActions/EnsureCleanNotebooksAction@1.1 | |
| - name: Configure NumCosmo | |
| run: | | |
| meson setup build -Dbuildtype=release -Dnumcosmo_py=true -Dmpi=disabled --prefix=/usr || (cat build/meson-logs/meson-log.txt && exit 1) | |
| - name: Building NumCosmo | |
| run: | | |
| meson compile -C build | |
| - name: Test python examples | |
| run: | | |
| source build/numcosmo_export.sh | |
| cd examples | |
| python example_simple.py | |
| python example_cbe.py | |
| - name: Check NumCosmo | |
| run: meson test -C build || (cat build/meson-logs/testlog.txt && exit 1) | |
| build-miniforge: | |
| name: (${{ matrix.os }}, py${{ matrix.python-version }}, ${{ matrix.mpi }}, Miniforge) | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| matrix: | |
| os: ["ubuntu", "macos"] | |
| python-version: ["3.10"] | |
| mpi: ["openmpi", "mpich"] | |
| exclude: | |
| - os: "macos" | |
| mpi: "openmpi" | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup miniforge | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: numcosmo_developer | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Mambaforge | |
| show-channel-urls: true | |
| use-mamba: true | |
| - name: Cache date | |
| id: get-date | |
| run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
| - name: Cache Conda env | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: miniforge-${{ runner.os }}--${{ runner.arch }}--python-${{ matrix.python-version }}--${{ matrix.mpi }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('devel_environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| CACHE_NUMBER: 0 | |
| id: cache | |
| - name: Update environment | |
| run: | | |
| mamba env update -q -v -n numcosmo_developer -f devel_environment.yml | |
| mamba remove -q -v -n numcosmo_developer openmpi | |
| mamba install -q -v -n numcosmo_developer ${{ matrix.mpi }} | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Setting up NumCosmo | |
| run: | | |
| conda activate numcosmo_developer | |
| [[ -e $GCC_AR ]] && AR=$GCC_AR | |
| [[ -e $GCC_NM ]] && NM=$GCC_NM | |
| [[ -e $GCC_RANLIB ]] && RANLIB=$GCC_RANLIB | |
| meson setup build -Dbuildtype=release -Dnumcosmo_py=true --libdir=$CONDA_PREFIX/lib --prefix=$CONDA_PREFIX || (cat build/meson-logs/meson-log.txt && exit 1) | |
| - name: Building NumCosmo | |
| run: | | |
| meson compile -C build | |
| - name: Installing NumCosmo | |
| run: | | |
| meson install -C build | |
| cd examples | |
| python example_simple.py | |
| python example_cbe.py | |
| - name: Running black check | |
| run: | | |
| black --check numcosmo_py | |
| - name: Running flake8 | |
| run: | | |
| flake8 numcosmo_py | |
| - name: Running mypy | |
| run: | | |
| mypy -p numcosmo_py | |
| #- name: Running pylint | |
| # run: | | |
| # pylint --rcfile .pylintrc numcosmo_py | |
| - name: Check NumCosmo | |
| run: meson test -C build || (cat build/meson-logs/testlog.txt && exit 1) | |
| build-miniforge-coverage: | |
| name: Coverage (${{ matrix.os }}, py${{ matrix.python-version }}, openmpi, Miniforge) | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| matrix: | |
| os: ["ubuntu"] | |
| python-version: ["3.10"] | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup miniforge | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: numcosmo_developer | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Mambaforge | |
| show-channel-urls: true | |
| use-mamba: true | |
| - name: Cache date | |
| id: get-date | |
| run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
| - name: Cache Conda env | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: coverage-miniforge-${{ runner.os }}--${{ runner.arch }}--python-${{ matrix.python-version }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('devel_environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| CACHE_NUMBER: 0 | |
| id: cache | |
| - name: Update environment | |
| run: | | |
| conda env update -q -v -n numcosmo_developer -f devel_environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Setting up NumCosmo | |
| run: | | |
| conda activate numcosmo_developer | |
| [[ -e $GCC_AR ]] && AR=$GCC_AR | |
| [[ -e $GCC_NM ]] && NM=$GCC_NM | |
| [[ -e $GCC_RANLIB ]] && RANLIB=$GCC_RANLIB | |
| meson setup build -Dbuildtype=debug -Db_coverage=true -Db_lto=false -Dnumcosmo_py=true --libdir=$CONDA_PREFIX/lib --prefix=$CONDA_PREFIX || (cat build/meson-logs/meson-log.txt && exit 1) | |
| - name: Building NumCosmo | |
| run: | | |
| meson compile -C build | |
| - name: Check and coverage | |
| # First run to generate the coverage base | |
| # Second run to generate the coverage for the tests | |
| # Third run to merge the coverage base and the coverage for the tests | |
| run: | | |
| lcov --config-file .lcovrc --no-external --capture --initial --directory build --directory numcosmo --directory tests --base-directory $(pwd)/build --output-file numcosmo-coverage-base.info | |
| meson test -C build --timeout-multiplier 0 || (cat build/meson-logs/testlog.txt && exit 1) | |
| lcov --config-file .lcovrc --no-external --capture --directory build --directory numcosmo --directory tests --base-directory $(pwd)/build --output-file numcosmo-coverage-tests.info | |
| lcov --config-file .lcovrc --add-tracefile numcosmo-coverage-base.info --add-tracefile numcosmo-coverage-tests.info --output-file numcosmo-coverage-full.info | |
| lcov --config-file .lcovrc --remove numcosmo-coverage-full.info '*/class/*' '*/levmar/*' '*/libcuba/*' '*/plc/*' '*/sundials/*' '*/toeplitz/*' '*/tools/*' --output-file numcosmo-coverage.info | |
| - name: CodeCov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| disable_search: true | |
| fail_ci_if_error: true | |
| files: ./numcosmo-coverage.info | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| verbose: true | |
| #- name: Generate coverage | |
| # # For some reason, gcovr is ignoring the configured gcovr.cfg file | |
| # # ninja coverage -C build -v -d stats -d explain | |
| # run: | | |
| # gcovr --root . --object-directory build --config gcovr.cfg --xml-pretty -o build/meson-logs/coverage.xml | |
| - name: Coveralls | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| files: ./numcosmo-coverage.info | |
| format: lcov | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |