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Popular repositories

  1. tidymodules tidymodules Public

    An Object-Oriented approach to Shiny modules

    R 140 11

  2. YADA YADA Public

    Open-source Data Ops

    Java 81 21

  3. peax peax Public

    Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

    Jupyter Notebook 67 14

  4. cellxgene-gateway cellxgene-gateway Public

    Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

    Python 52 32

  5. scar scar Public

    scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics

    Python 42 4

  6. shinyValidator shinyValidator Public

    Audit your Shiny apps at each commit. Multiple levels of testings are offered: startup and crash tests, performance tests (load test and global code profiling), reactivity audit as well as output t…

    HTML 39 3

Repositories

Showing 10 of 84 repositories
  • bamdd Public

    Applied modelling in drug development: flexible Bayesian regression modelling in Stan via brms

    TeX 2 GPL-2.0 1 0 1 Updated Apr 26, 2024
  • torchsurv Public

    Deep survival analysis made easy

    Python 19 MIT 4 3 0 Updated Apr 19, 2024
  • TF_Prioritization_Benchmark_GB2023 Public

    Code to reproduce the paper figures from TF prioritization tool outputs.

    0 MIT 0 0 0 Updated Apr 17, 2024
  • px_tmt_daa Public

    Differential abundance analysis of proteomics (TMT) data

    0 MIT 0 0 0 Updated Apr 11, 2024
  • monitOS Public

    Monitoring overall survival in pivotal trials for indolent cancer

    R 0 MIT 1 0 1 Updated Apr 9, 2024
  • Causal-inference-in-RCTs Public

    This repository contains code examples for several methods in a Causal Inference in RCTs short course.

    R 17 MIT 0 0 0 Updated Apr 8, 2024
  • knockoffs-cpt2024paper-simulations Public

    An R-repository to run simulation studies as in the paper 'All that glitters is not gold: Type-I error controlled variable selection from clinical trial data' by Zimmermann et al. (2024)

    R 1 MIT 0 0 0 Updated Mar 20, 2024
  • cellxgene-gateway Public

    Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

    Python 52 Apache-2.0 32 8 (1 issue needs help) 1 Updated Mar 10, 2024
  • knockofftools Public

    An R-package containing a suite of knockoffs functions and methods from existing R-packages and the knockoffs literature. Some of the R functions are novel implementations of recent methods.

    R 1 MIT 0 0 0 Updated Mar 4, 2024
  • TAT Public

    Transcriptomics-to-Activity Transformer (TAT) is a deep learning model to predict compound bioactivity in a dose-response assay using compound-induced transcriptomic profiles over concentration.

    Python 3 Apache-2.0 1 0 0 Updated Jan 30, 2024
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