Popular repositories

1. W_NucleiSegmentation-CellProfiler W_NucleiSegmentation-CellProfiler Public template

   NEUBIAS-WG5 workflow for nuclei segmentation using CellProfiler 2.2.0

   Python 2 2

2. W_NucleiSegmentation3D-ImageJ W_NucleiSegmentation3D-ImageJ Public template

   BIAFLOWS workflow to segment clustered nuclei using a 3D filter, thresholding and a 3D binary watershed.

   Dockerfile 2 1

3. W_NucleiSegmentation-UNet W_NucleiSegmentation-UNet Public template

   3-class U-Net segmentation.

   Python 2

4. W_ObjectTracking-MU-Lux-CZ W_ObjectTracking-MU-Lux-CZ Public template

   Python 2 1

5. W_NeuronTracing_vaa3d_fastmarching_spanningtree W_NeuronTracing_vaa3d_fastmarching_spanningtree Public template

   Trace 3d neuron with vaa3d BJUT Fast Marching Spanning Tree algorithm

   Python 2

6. Biaflows-bootstrap Biaflows-bootstrap Public

   Forked from Cytomine-ULiege/Cytomine-bootstrap

   Biaflows installation procedure on a web server or a personal laptop. This procedure is based on ULiege Cytomine bootstrap (see @cytomine-uliege & @cytomine).

   Shell 1 1