Vcontacts

Commandline tool to compute surface areas in contact using the constrained Voronoi procedure from the paper: Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure. (doi: 10.1093/bioinformatics/18.10.1365)

To compile:

gcc -c Vcontacts-v1-2.c

gcc Vcontacts-v1-2.o -o vcontacts

To run:

./vcontacts yourpdbfile.pdb

To analyze:

Vcont.pl a wrapper to make using Vcontacs more user friendly

perl vcont.pl -h # usage of the script