Simplifying dependencies

create_eagle_env.sh

@@ -26,13 +26,13 @@ MY_CONDA_PREFIX="$CONDA_ENVS_DIR/$MY_CONDA_ENV_NAME"
 echo "Creating $MY_CONDA_PREFIX"
 module load conda
 conda remove -y --prefix "$MY_CONDA_PREFIX" --all
-conda create -y --prefix "$MY_CONDA_PREFIX" -c conda-forge "pyarrow>=7.0.0" "python=3.9" "numpy>=1.20.0" "pandas>=1.0.0,!=1.0.4" "dask>=2022.10.0" "distributed>=2021.5" ruby
-source deactivate 
-source activate "$MY_CONDA_PREFIX"
+mamba create -y --prefix "$MY_CONDA_PREFIX" -c conda-forge "python=3.10" "pyarrow" "numpy" "pandas" "dask>=2022.10.0" "distributed" "ruby"
+conda deactivate
+conda activate "$MY_CONDA_PREFIX"
 which pip
 if [ $DEV -eq 1 ]
 then
-    pip install --ignore-installed -e .
+    pip install --no-cache-dir --ignore-installed -e .
 else
-    pip install --ignore-installed .
+    pip install --no-cache-dir --ignore-installed .
 fi

docs/changelog/changelog_dev.rst

@@ -14,3 +14,9 @@ Development Changelog
         This is an example change. Please copy and paste it - for valid tags please refer to ``conf.py`` in the docs
         directory. ``pullreq`` should be set to the appropriate pull request number and ``tickets`` to any related
         github issues. These will be automatically linked in the documentation.
+
+    .. change::
+        :tags: general, bugfix
+        :pullreq: 323
+
+        Updates and simplifies python dependencies.

setup.py

@@ -57,36 +57,31 @@ def run_tests(self):
     install_requires=[
         'pyyaml',
         'requests',
-        'numpy>=1.20.0',
-        'pandas>=1.0.0,!=1.0.4',
+        'numpy',
+        'pandas',
         'joblib',
-        'pyarrow>=3.0.0',
+        'pyarrow',
         'dask[complete]>=2022.10.0',
         'docker',
-        'boto3>=1.10.44',
-        's3fs>=0.4.0,<0.5.0',
-        'fsspec>=0.6.0',
-        'docutils<0.15,>=0.10',
-        'yamale>=2.0',
-        'ruamel.yaml>=0.15.0',
-        'testfixtures',
+        's3fs[boto3]',
+        'fsspec',
+        'yamale',
+        'ruamel.yaml',
         'awsretry',
-        'jinja2<3.1.0'
     ],
     extras_require={
         'dev': [
-            'pytest>=2.8.0',
+            'pytest',
             'pytest-mock',
             'pytest-cov',
-            'codecov',
+            'testfixtures',
             'Sphinx',
             'sphinx_rtd_theme',
             'sphinx-autobuild',
             'sphinxcontrib-programoutput',
             'sphinx_paramlinks',
             'changelog',
             'flake8',
-            'coverage',
             'rope',
             'doc8'
         ]