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Merge pull request #118 from jarq6c/nwis_update
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Add value_time_label option to nwis_client
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jarq6c committed Jul 29, 2021
2 parents 79d4e31 + 92baee0 commit d43f1ae
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Showing 4 changed files with 39 additions and 8 deletions.
4 changes: 3 additions & 1 deletion python/nwis_client/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,9 @@ The following example demonstrates how one might use `hydrotools.nwis_client` to
from hydrotools.nwis_client.iv import IVDataService

# Retrieve data from a single site
service = IVDataService()
service = IVDataService(
value_time_label="value_time"
)
observations_data = service.get(
sites='01646500',
startDT='2019-08-01',
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2 changes: 1 addition & 1 deletion python/nwis_client/setup.cfg
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
[metadata]
name = hydrotools.nwis_client
version = 3.0.2
version = 3.0.3
author = Austin Raney
author_email = aaraney@protonmail.com
description = A convenient interface to the USGS NWIS Instantaneous Values (IV) REST Service API.
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28 changes: 22 additions & 6 deletions python/nwis_client/src/hydrotools/nwis_client/iv.py
Original file line number Diff line number Diff line change
Expand Up @@ -38,6 +38,8 @@ class IVDataService:
Toggle sqlite3 request caching
cache_expire_after : int
Cached item life length in seconds
value_time_label: str, default 'value_date'
Label to use for datetime column returned by IVDataService.get
Examples
--------
Expand Down Expand Up @@ -85,8 +87,13 @@ class IVDataService:
)
_requests_cache_filename = "nwisiv_cache"
_headers = {"Accept-Encoding": "gzip, compress"}
_value_time_label = None

def __init__(self, *, enable_cache: bool = True, cache_expire_after: int = 43200):
def __init__(self, *,
enable_cache: bool = True,
cache_expire_after: int = 43200,
value_time_label: str = None
):
self._cache_enabled = enable_cache
self._restclient = RestClient(
base_url=self._base_url,
Expand All @@ -95,6 +102,12 @@ def __init__(self, *, enable_cache: bool = True, cache_expire_after: int = 43200
cache_filename=self._requests_cache_filename,
cache_expire_after=cache_expire_after,
)
if value_time_label == None:
self._value_time_label = "value_date"
warning_message = "Setting value_time_label to value_date. Future versions will default to value_time. To silence this warning set value_time_label."
warnings.warn(warning_message, UserWarning)
else:
self._value_time_label = value_time_label

def get(
self,
Expand Down Expand Up @@ -237,8 +250,6 @@ def list_to_df_helper(item: dict):

# Empty list. No data was returned in the request
if not list_of_frames:
import warnings

warning_message = "No data was returned by the request."
warnings.warn(warning_message)
return pd.DataFrame(None)
Expand All @@ -250,7 +261,7 @@ def list_to_df_helper(item: dict):
dfs.loc[:, "value"] = pd.to_numeric(dfs["value"], downcast="float")

# Convert all times to UTC
dfs["value_date"] = pd.to_datetime(
dfs[self.value_time_label] = pd.to_datetime(
dfs["dateTime"], utc=True, infer_datetime_format=True
).dt.tz_localize(None)

Expand All @@ -259,7 +270,7 @@ def list_to_df_helper(item: dict):

# Sort DataFrame
dfs = dfs.sort_values(
["usgs_site_code", "measurement_unit", "value_date"], ignore_index=True
["usgs_site_code", "measurement_unit", self.value_time_label], ignore_index=True
)

# Fill NaNs
Expand All @@ -284,7 +295,7 @@ def list_to_df_helper(item: dict):
# DataFrame in semi-WRES compatible format
return dfs[
[
"value_date",
self.value_time_label,
"variable_name",
"usgs_site_code",
"measurement_unit",
Expand Down Expand Up @@ -693,6 +704,11 @@ def datetime_format(self) -> str:
""" API's expected datetime format """
return self._datetime_format

@property
def value_time_label(self) -> str:
""" Label to use for datetime column """
return self._value_time_label


def validate_optional_combinations(
arg_mapping: Dict[str, T],
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13 changes: 13 additions & 0 deletions python/nwis_client/tests/test_nwis.py
Original file line number Diff line number Diff line change
Expand Up @@ -79,6 +79,12 @@ def setup_iv(loop):
yield o
o._restclient.close()

@pytest.fixture
def setup_iv_value_time(loop):
o = iv.IVDataService(value_time_label="value_time")
yield o
o._restclient.close()


simplify_variable_test_data = [
("test", ",", "test"),
Expand Down Expand Up @@ -135,6 +141,13 @@ def test_get(setup_iv, sites, validation):
df = setup_iv.get(sites=sites, parameterCd="00060")
assert df["usgs_site_code"].isin(validation).all()

@pytest.mark.slow
@pytest.mark.parametrize("sites,validation", GET_PARAM_SITES)
def test_get_value_time(setup_iv_value_time, sites, validation):
"""Test data retrieval and parsing"""
df = setup_iv_value_time.get(sites=sites, parameterCd="00060")
assert df["usgs_site_code"].isin(validation).all()
assert "value_time" in df

def test_get_raw_with_mock(setup_iv, monkeypatch):
"""Test data retrieval and parsing"""
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