Podman-HPC

Podman-HPC (podman-hpc) is a wrapper script around the Pod Manager (podman) container engine, which provides HPC configuration and infrastructure for the Podman ecosystem at NERSC.

Configuration

The wrapper can be configured through a configuration file and environment variables. The order of precedence from lowest to highest is:

1. built-in defaults
2. configuration file template (if a template is allowed)
3. environment variable template (if a template is allowed)
4. configuration file
5. enviornment variables

The enviornment variable override is the configuration parameter in upper case prefixed with PODMANHPC_ (e.g. podman_bin becomes PODMANHPC_PODMAN_BIN).

The list of configurable values is:

• podman_bin: (str) path to the podman binary (default: podman)
• mount_program: (str) path the mount_program wrapper (default: fuse-overlayfs-wrap)
• modules_dir: (str) directory of podman-hpc modules
• shared_run_exec_args: (str) additional arguments passed to the exec command when using shared_run mode (default: None)
• shared_run_command: (list) command to run in the shared_run container (default: sleep infinity)
• graph_root: (str) directory for the graph root (default: /tmp/{uid}_hpc/storage)
• run_root: (str) directory for the run root (default: /tmp/{uid}_hpc)
• use_default_args: (bool) default True. User can set to False to turn off all defaults, and must provide all settings themselves.
• additional_stores: (list) additional storage areas
• hooks_dir: (str) directory for hooks. Note: this should have the podman_hpc hooks tool configured.
• config_home: (str) directory where the generated configuration files will be written and XDG_CONFIG_HOME will be set.
• localid_var: (str) environment variable to determine the local node rank (default: SLURM_LOCALID)
• tasks_per_node_var: (str) environment variable to determine the tasks per node (default: SLURM_STEP_TASKS_PER_NDOE)
• ntasks_pattern: (str) regular expression pattern to filter the tasks per node (default: [0-9]+)
• wait_timeout: (str) timeout in seconds to wait for a shared-run container to start (default: 10)
• wait_poll_interval: (str) interval in seconds to poll for a shared-run container to start (default: 0.2)

Templating

Some parameters can be set using a template. The template is set by the parameter with _template appended to the parameter to be templated (e.g. graph_root_template would be used to generate the value for the graph_root parameter).

The template replaces strings with {{ variable }} with the approriate value. The following variables are supported.

• uid: replaced with the user id of the calling user
• user: replaced with the user name of the calling user
• env.VARIABLE: replaced with the value of the environment VARIABLE. For example, env.HOME would be replaced with the value of HOME.

Prerequisites

1. podman should be installed separately, per the instructions at https://podman.io/

Site Installation

It is recommended that podman-hpc is installed site-wide in a multi-user HPC center. To build and deploy an RPM using this repo:

1. git clone https://github.com/NERSC/podman-hpc
2. cd podman-hpc
3. ./rpmsrcprep.sh
4. rpmbuild -ba podman-hpc.spec
5. Deploy resulting RPM as usual.
6. (Optional) Add/edit site modules as required in /etc/podman_hpc/modules.d

Developer Installation

The podman-hpc package is bundled as a python package and may be installed in an isolated python environment for development or testing.

1. git clone https://github.com/NERSC/podman-hpc
2. cd podman-hpc
3. pip install .
4. python -m podman_hpc.configure_hooks
5. (Optional) Add/edit site modules as required in <podman-hpc python sys.prefix>/etc/podman_hpc/modules.d