Releases
v1.13
ewels
released this
08 Sep 21:35
MultiQC updates
Major spruce of the command line help, using the new rich-click package
Drop some of the Python 2k compatability code (eg. custom requirements)
Improvements for running MultiQC in a Python environment, such as a Jupyter Notebook or script
Fixed bug raised when removing logging file handlers between calls that arose when configuring the root logger with dictConfig (#1643 )
Added new config option custom_table_header_config
to override any config for any table header
Fixed edge-case bug in custom content where a description
that doesn't terminate in .
gave duplicate section descriptions.
Tidied the verbose log to remove some very noisy statements and add summaries for skipped files in the search
Add timezone to time in reports
Add nix flake support
Added automatic tweet about new releases
Module updates
AdapterRemoval
Finally merge a fix for counts of reads that are discarded/collapsed (#1647 )
VEP
Fixed bug when General Statistics
have a value of -
(#1656 )
Custom content
Only set id for custom content when id not set by metadata (#1629 )
Fix bug where module wouldn't run if all content was within a MultiQC config file (#1686 )
Fix crash when info
isn't set (#1688 )
Nanostat
Removed HTML escaping of special characters in the log to fix bug in jinja2 v3.10 removing jinja2.escape()
(#1659 )
Fix bug where module would crash if input does not contain quality scores (#1717 )
Pangolin
Updated module to handle outputs from Pangolin v4 (#1660 )
Somalier
Handle zero mean X depth in Sex plot (#1670 )
Fastp
Include low complexity and too long reads in filtering bar chart
miRTop
Fix module crashing when ref_miRNA_sum
is missing in file. (#1712 )
Fix module crashing due to zero division (#1719 )
FastQC
Fixed error when parsing duplicate ratio when there is nan
values in the report. (#1725 )
You can’t perform that action at this time.