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19 Open 17 Closed
19 Open 17 Closed
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Issues list

bug with non-standard evaluation and callr
#29 opened Dec 2, 2021 by rmflight
@rmflight
Inconsistent data type values in annotations.json
#26 opened Nov 13, 2018 by ehinderer
1
Need more informative error on missing json_file when running categoryCompare.R executable
#24 opened Mar 11, 2018 by ehinderer
@rmflight
wrapper for most common use case
#23 opened Apr 23, 2017 by rmflight
consider R6 methods
#22 opened Aug 25, 2016 by rmflight
add default labels, and methods to change them
#21 opened Aug 25, 2016 by rmflight
1
move generate_annotation_similarity_graph switch outside the calc_similarity
#20 opened May 14, 2016 by rmflight
add weight based on enrichment similarity
#19 opened Apr 26, 2016 by rmflight
hypergeom_feature constructor
#17 opened Apr 26, 2016 by rmflight
hypergeom_feature should create universe if null
#16 opened Apr 26, 2016 by rmflight
single function for generating annotation object from eg.db
#15 opened Apr 26, 2016 by rmflight
vignette should show eg.db usage
#14 opened Apr 26, 2016 by rmflight
more testing!
#13 opened Jun 17, 2015 by rmflight
use Map to do multiple hypergeometric or GSEA enrichment vignette
#10 opened May 29, 2015 by rmflight v1.0, bioc 3.2
@rmflight
converting from v1 to v2 code vignette
#9 opened May 29, 2015 by rmflight v1.0, bioc 3.2
@rmflight
have example with different gene universes vignette
#8 opened May 29, 2015 by rmflight v1.0, bioc 3.2
@rmflight
convert Category result objects to enrichment_objects core
#6 opened May 29, 2015 by rmflight v1.0, bioc 3.2
@rmflight
annotation_combinations should take a logical matrix core enhancement
#5 opened May 29, 2015 by rmflight v1.0, bioc 3.2
@rmflight
set individual cutoffs core enhancement
#4 opened May 29, 2015 by rmflight v1.0, bioc 3.2
@rmflight
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