The goal of snvtyping is to preprocess and analyze VCF files containing SNV
mutations, by getting the genomic context of all of its Single Nucleotide
Variants mutations. It can also classify group them by type of SNV, by type of
context and then plot their frequency.
You can install the development version of snvtyping from GitHub with:
# install.packages("devtools")
devtools::install_github("MorfeoRenai/snvtyping")Check out the vignette in GitHub.
You can also read and run the vignette with:
vignette("snvtyping")