v4.0.2

Patch update:

• The Q30 Handler now checks the index reads as well.

v4.0.1

Patch change:

• Bumped version to be able to make a new PyPI release with the correct tag.

v4.0.0

Major changes

• CheckQC now requires Python v3.10

Minor Changes

• Update Reagent Recognizer to support NovaSeq X Plus Control Software v1.2

Update dependencies

Update dependency to interop.

Add support for NovaSeq X Plus

This version introduces support for NovaSeq X Plus instruments.

Add support for Nano and Micro MiSeqs

New feature:

• Added support for Nano and Micro Miseq flowcells that produces less data than a regular flowcell. CheckQC can now detect those types of runs and QC criteria for those types have been added to the config.

Use PyYAML's safe_load instead of load

Patch changes:

• Use PyYAML's safe_load instead of load (#101)

Clearer QC messages

Patch changes:

• Fixed travis integration issue
• Updated QC messages in unidentified index handler to be clearer about which index it is referring to

v1.5 reagents adjustements to NovaSeq

Patch changes:

• Minor adjustments of NovaSeq QC thresholds to account for the v1.5 reagents.

Default config update and fixing docs (with bumped version number)

New release since version number never was incremented in the last one

Patch updates:

• Bioconda information added to README
• Docs building fixes
• Updated some QC thresholds in the default config