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Administrator Documentation

[Installation and Configuration] (install-config)

[API Access] (api)

Loading Data

[Adding new Assemblies] (sequence)

Adding samples (Bam/Wig/VCF)

[Adding Blast Reports] (blast)

[Adding custom annotations] (custom-anno)

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[CLC Pipeline for RNA-Seq] (clc-rna-seq)

General Process for New Data

1. Load Sequence
   • sequence:load
2. Load BLAST reports
   • blast:create_db
   • blast:create_run
3. Setup BLAST GUI
   • sequence:dump_features
   • formatdb -i file -p F -o T (in lib/data/blastdb)
4. Load Samples
   • concordance:load
   • sample:create
   • expression:load
5. Restart
   • touch tmp/restart.txt