/
Gemfile.lock
399 lines (394 loc) · 9.05 KB
/
Gemfile.lock
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GIT
remote: git://github.com/clyfe/devise_ldap_authenticatable.git
revision: 4d41c6c3d8e6b08902ee24def683f5f9fd784f19
specs:
devise_ldap_authenticatable (0.4.6)
devise (~> 1.3.4)
net-ldap (~> 0.2.2)
GIT
remote: git://github.com/throwern/bioruby-samtools.git
revision: 30fde94f4910ed9244eb1f928626feb8f4b8a53a
specs:
bio-samtools (0.5.2)
bio (>= 1.4.2)
ffi
PATH
remote: vendor/gems/composite_primary_keys-3.1.10
specs:
composite_primary_keys (3.1.10)
GEM
remote: http://rubygems.org/
specs:
RedCloth (4.2.9)
abstract (1.0.0)
actionmailer (3.0.9)
actionpack (= 3.0.9)
mail (~> 2.2.19)
actionpack (3.0.9)
activemodel (= 3.0.9)
activesupport (= 3.0.9)
builder (~> 2.1.2)
erubis (~> 2.6.6)
i18n (~> 0.5.0)
rack (~> 1.2.1)
rack-mount (~> 0.6.14)
rack-test (~> 0.5.7)
tzinfo (~> 0.3.23)
activemodel (3.0.9)
activesupport (= 3.0.9)
builder (~> 2.1.2)
i18n (~> 0.5.0)
activerecord (3.0.9)
activemodel (= 3.0.9)
activesupport (= 3.0.9)
arel (~> 2.0.10)
tzinfo (~> 0.3.23)
activeresource (3.0.9)
activemodel (= 3.0.9)
activesupport (= 3.0.9)
activesupport (3.0.9)
acts-as-taggable-on (2.3.3)
rails (~> 3.0)
acts_as_api (0.4.1)
activemodel (>= 3.0.0)
activesupport (>= 3.0.0)
rack (>= 1.1.0)
addressable (2.3.5)
annotate (2.5.0)
rake
arel (2.0.10)
aruba (0.5.3)
childprocess (>= 0.3.6)
cucumber (>= 1.1.1)
rspec-expectations (>= 2.7.0)
awesome_print (1.1.0)
bcrypt-ruby (2.1.4)
better_errors (0.9.0)
coderay (>= 1.0.0)
erubis (>= 2.6.6)
binding_of_caller (0.7.2)
debug_inspector (>= 0.0.1)
bio (1.4.3.0001)
bio-tabix (1.0.1)
ffi
bio-ucsc-util (0.1.2)
ffi
brakeman (2.0.0)
erubis (~> 2.6)
fastercsv (~> 1.5)
haml (>= 3.0, < 5.0)
highline (~> 1.6.19)
multi_json (~> 1.2)
ruby2ruby (~> 2.0.5)
ruby_parser (~> 3.1.1)
sass (~> 3.0)
slim (~> 1.3.6)
terminal-table (~> 1.4)
builder (2.1.2)
cancan (1.6.10)
cane (2.6.0)
parallel
capybara (2.1.0)
mime-types (>= 1.16)
nokogiri (>= 1.3.3)
rack (>= 1.0.0)
rack-test (>= 0.5.4)
xpath (~> 2.0)
childprocess (0.5.0)
ffi (~> 1.0, >= 1.0.11)
climate_control (0.0.3)
activesupport (>= 3.0)
cocaine (0.5.1)
climate_control (>= 0.0.3, < 1.0)
coderay (1.0.9)
colored (1.2)
cucumber (1.3.2)
builder (>= 2.1.2)
diff-lcs (>= 1.1.3)
gherkin (~> 2.12.0)
multi_json (~> 1.3)
cucumber-rails (1.3.1)
capybara (>= 1.1.2)
cucumber (>= 1.2.0)
nokogiri (>= 1.5.0)
rails (~> 3.0)
daemons (1.1.4)
database_cleaner (1.0.1)
debug_inspector (0.0.2)
delayed_job (3.0.5)
activesupport (~> 3.0)
delayed_job_active_record (0.4.4)
activerecord (>= 2.1.0, < 4)
delayed_job (~> 3.0)
descriptive-statistics (2.1.1)
devise (1.3.4)
bcrypt-ruby (~> 2.1.2)
orm_adapter (~> 0.0.3)
warden (~> 1.0.3)
diff-lcs (1.2.4)
em-websocket (0.5.0)
eventmachine (>= 0.12.9)
http_parser.rb (~> 0.5.3)
erubis (2.6.6)
abstract (>= 1.0.0)
eventmachine (1.0.3)
exception_notification (2.4.1)
factory_girl (4.2.0)
activesupport (>= 3.0.0)
fastercsv (1.5.5)
fattr (2.2.1)
ffi (1.9.0)
flay (2.3.0)
ruby_parser (~> 3.0)
sexp_processor (~> 4.0)
flog (4.1.0)
ruby_parser (~> 3.1, > 3.1.0)
sexp_processor (~> 4.0)
formatador (0.2.4)
formtastic (2.2.1)
actionpack (>= 3.0)
gherkin (2.12.0)
multi_json (~> 1.3)
guard (1.8.1)
formatador (>= 0.2.4)
listen (>= 1.0.0)
lumberjack (>= 1.0.2)
pry (>= 0.9.10)
thor (>= 0.14.6)
guard-livereload (1.4.0)
em-websocket (>= 0.5.0)
guard (>= 1.8.0)
multi_json (~> 1.7)
haml (4.0.3)
tilt
highline (1.6.19)
http_parser.rb (0.5.3)
i18n (0.5.0)
jquery-rails (3.1.0)
railties (>= 3.0, < 5.0)
thor (>= 0.14, < 2.0)
json (1.8.0)
json_spec (1.1.1)
multi_json (~> 1.0)
rspec (~> 2.0)
launchy (2.4.2)
addressable (~> 2.3)
listen (1.2.2)
rb-fsevent (>= 0.9.3)
rb-inotify (>= 0.9)
rb-kqueue (>= 0.2)
lumberjack (1.0.3)
mail (2.2.20)
activesupport (>= 2.3.6)
i18n (>= 0.4.0)
mime-types (~> 1.16)
treetop (~> 1.4.8)
method_source (0.8.1)
mime-types (1.23)
mini_portile (0.5.0)
multi_json (1.7.7)
net-ldap (0.2.2)
nokogiri (1.6.0)
mini_portile (~> 0.5.0)
options (2.3.0)
fattr
orm_adapter (0.0.7)
paper_trail (2.7.2)
activerecord (~> 3.0)
railties (~> 3.0)
paperclip (3.4.2)
activemodel (>= 3.0.0)
activerecord (>= 3.0.0)
activesupport (>= 3.0.0)
cocaine (~> 0.5.0)
mime-types
parallel (0.7.0)
polyamorous (0.5.0)
activerecord (~> 3.0)
polyglot (0.3.3)
pr_geohash (1.0.0)
progress_bar (1.0.0)
highline (~> 1.6.1)
options (~> 2.3.0)
progressbar (0.11.0)
pry (0.9.12.2)
coderay (~> 1.0.5)
method_source (~> 0.8)
slop (~> 3.4)
rack (1.2.8)
rack-mount (0.6.14)
rack (>= 1.0.0)
rack-test (0.5.7)
rack (>= 1.0)
rails (3.0.9)
actionmailer (= 3.0.9)
actionpack (= 3.0.9)
activerecord (= 3.0.9)
activeresource (= 3.0.9)
activesupport (= 3.0.9)
bundler (~> 1.0)
railties (= 3.0.9)
rails3-jquery-autocomplete (1.0.11)
rails (~> 3.0)
rails_best_practices (1.10.1)
activesupport
awesome_print
colored
erubis
i18n
progressbar
sexp_processor
railties (3.0.9)
actionpack (= 3.0.9)
activesupport (= 3.0.9)
rake (>= 0.8.7)
rdoc (~> 3.4)
thor (~> 0.14.4)
rake (10.0.4)
rb-fsevent (0.9.3)
rb-inotify (0.9.0)
ffi (>= 0.5.0)
rb-kqueue (0.2.0)
ffi (>= 0.5.0)
rdiscount (2.1.7.1)
rdoc (3.12.2)
json (~> 1.4)
reek (1.3.1)
ruby2ruby (~> 2.0.2)
ruby_parser (~> 3.1.1)
sexp_processor
rsolr (1.0.10)
builder (>= 2.1.2)
rspec (2.13.0)
rspec-core (2.13.1)
rspec-expectations (2.13.0)
diff-lcs (>= 1.1.3, < 2.0)
rspec-mocks (2.13.1)
rspec-rails (2.13.2)
actionpack (>= 3.0)
activesupport (>= 3.0)
railties (>= 3.0)
rspec-core (~> 2.13.0)
rspec-expectations (~> 2.13.0)
rspec-mocks (~> 2.13.0)
ruby2ruby (2.0.5)
ruby_parser (~> 3.1)
sexp_processor (~> 4.0)
ruby_parser (3.1.3)
sexp_processor (~> 4.1)
rubyzip (1.1.6)
sass (3.2.9)
selenium-webdriver (2.42.0)
childprocess (>= 0.5.0)
multi_json (~> 1.0)
rubyzip (~> 1.0)
websocket (~> 1.0.4)
sexp_processor (4.2.1)
shoulda (3.5.0)
shoulda-context (~> 1.0, >= 1.0.1)
shoulda-matchers (>= 1.4.1, < 3.0)
shoulda-context (1.1.2)
shoulda-matchers (2.2.0)
activesupport (>= 3.0.0)
simple-tooltip (0.0.2)
RedCloth
jquery-rails
rails (~> 3.0)
rdiscount
thor (~> 0.14.4)
simplecov (0.7.1)
multi_json (~> 1.0)
simplecov-html (~> 0.7.1)
simplecov-html (0.7.1)
slim (1.3.9)
temple (~> 0.6.3)
tilt (~> 1.3, >= 1.3.3)
slop (3.4.5)
sqlite3 (1.3.9)
squeel (0.9.5)
activerecord (~> 3.0)
activesupport (~> 3.0)
polyamorous (~> 0.5.0)
sunspot (2.1.1)
pr_geohash (~> 1.0)
rsolr (~> 1.0.7)
sunspot_rails (2.1.1)
nokogiri
rails (>= 3)
sunspot (= 2.1.1)
sunspot_solr (2.1.1)
temple (0.6.5)
terminal-table (1.4.5)
thor (0.14.6)
tilt (1.4.1)
treetop (1.4.14)
polyglot
polyglot (>= 0.3.1)
tzinfo (0.3.37)
warden (1.0.6)
rack (>= 1.0)
websocket (1.0.7)
will_paginate (3.0.4)
xmlparser (0.7.2.1)
xpath (2.0.0)
nokogiri (~> 1.3)
PLATFORMS
ruby
DEPENDENCIES
acts-as-taggable-on (~> 2.3.1)
acts_as_api (~> 0.3)
annotate (>= 2.5)
aruba
better_errors
binding_of_caller
bio (~> 1.4.3)
bio-samtools (= 0.5.2)!
bio-tabix (= 1.0.1)
bio-ucsc-util (= 0.1.2)
brakeman
cancan
cane
capybara
composite_primary_keys (= 3.1.10)!
cucumber
cucumber-rails
daemons (= 1.1.4)
database_cleaner
delayed_job (~> 3)
delayed_job_active_record
descriptive-statistics
devise (~> 1.3.4)
devise_ldap_authenticatable!
exception_notification (~> 2.4.1)
factory_girl
flay
flog
formtastic (~> 2.2.1)
guard
guard-livereload
json_spec
launchy
paper_trail (~> 2)
paperclip (~> 3.0)
parallel
progress_bar (~> 1.0.0)
rails (= 3.0.9)
rails3-jquery-autocomplete
rails_best_practices
rb-fsevent
reek
rspec
rspec-rails
selenium-webdriver (~> 2.42.0)
shoulda
simple-tooltip
simplecov
sqlite3
squeel (~> 0.9)
sunspot (~> 2.1.1)
sunspot_rails (~> 2.1.1)
sunspot_solr (~> 2.1.1)
terminal-table (~> 1.4.5)
thor (~> 0.14.6)
will_paginate (~> 3)
xmlparser