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README

Research code for the paper "Sequential Design of Computer Experiments for the Computation of Bayesian Model Evidence"

A more organized implementation of the paper's method is available in my other repository bali. I strongly recommend using that implementation, unless you need to specifically reproduce the experiments from the article.

Quick start

To run the code, you need the python packages

  • numpy (1.16.4)
  • scipy (1.3.0)
  • emcee. (2.2.1)

The two scripts 01_computations.py and 02_computations.py run the experiments and generate output data. The script 03_plots.py processes the output data into tables that can be uses for creating the plots (with pgfplots).

Folders

  • bbi contains the package for running sequential designs
  • data contains the dataset for the first experiment and the dataset and input-output data for the second experiment
  • ouput contains the output generated by the computations in 01_computations.py and 02_computations.py (content can be reproduced by running these)
  • plotdata contains the files that are generated by 03_plots.py

Due to filesize the input-output-data of experiment 2 is not included in this repository. Please contact the authors, if you need the data.

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Source code for the numerical experiments in my research paper "Sequential Design of Computer Experiments for the Computation of Bayesian Model Evidence"

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