Protein folding simulation

This is the work I completed for my final project. It is a protein folding simulation that attempts to fold an alpha helix from scratch using PyRosetta and the simulated annealing algorithm. For an easy to view overview check out the html file (you will have to download the associated images).

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commits
100folding.png		100folding.png
1gcn.pdb		1gcn.pdb
1nkp.pdb		1nkp.pdb
1nkp_lz.pdb		1nkp_lz.pdb
5oqk.pdb		5oqk.pdb
Chemical schematic of a protein.jpg		Chemical schematic of a protein.jpg
LJP.jpg		LJP.jpg
Protein folding.html		Protein folding.html
Protein folding.ipynb		Protein folding.ipynb
Protein_backbone.png		Protein_backbone.png
README.md		README.md
alpha.ent		alpha.ent
alpha_folded.png		alpha_folded.png
alpha_helix.png		alpha_helix.png
alpha_helix_180.png		alpha_helix_180.png
alpha_helix_ribbon.png		alpha_helix_ribbon.png
energy_landscape.jpg		energy_landscape.jpg
folded_tem0.1_cooling0.0001_rmsd2.3.png		folded_tem0.1_cooling0.0001_rmsd2.3.png
folded_tem10000_cooling_0.001_rmsd3.1.png		folded_tem10000_cooling_0.001_rmsd3.1.png
folded_tem1000_cooling_0.001_rmsd3.7.png		folded_tem1000_cooling_0.001_rmsd3.7.png
folded_tem100_cooling_0.001_rmsd3.9.png		folded_tem100_cooling_0.001_rmsd3.9.png
folded_tem10_cooling_0.0001_rmsd3.1.png		folded_tem10_cooling_0.0001_rmsd3.1.png
folded_tem10_cooling_0.0001_rmsd3.3.png		folded_tem10_cooling_0.0001_rmsd3.3.png
unfolded_rmsd9.png		unfolded_rmsd9.png

Michael-Geuenich/protein-folding-simulation

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Protein folding simulation

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