Pinned

1. PcaPlot PcaPlot Public

   R script to make Pca plots given a gene expression matrix and pheno table

   R

2. PlotCluster PlotCluster Public

   PlotCluster

   R

3. MiKTMCSnakemakePipeline MiKTMCSnakemakePipeline Public

   Attempt at snakemake pipeline. Pyflow was forked from https://github.com/crazyhottom but the Snakefile infrastructure and rule calling was inspired by https://github.com/snakemake-workflows

   R 1

4. SlurmMiKTMC SlurmMiKTMC Public

   Snakemake pipeline modified to run on Greatlakes with Slurm job handler

   R 1

5. VcfAnnotator VcfAnnotator Public

   Python

6. InterferonScore InterferonScore Public

   A script to run interferon response scores given an expression matrix and list of gene symbols

   R