MSU-Hsu-Lab
Popular repositories
-
biobank-scale-methods-paper-2023
biobank-scale-methods-paper-2023 PublicPublic repository accompanying the publication "Biobank-scale methods and projections for sparse polygenic prediction from machine learning", containing code and predictors.
-
biomarker-paper-2021
biomarker-paper-2021 PublicPublic reference code for the paper "Machine Learning Prediction of Blood and Urine Biomarkers from Genotype and of Disease Risk from Biomarkers in the UK Biobank".
Jupyter Notebook 1
-
lassoPipeline
lassoPipeline PublicThis is the set of scripts that will subset phenotype files, create training/validation/testing sets, run gwas, run lasso and then score the final lasso output using genetic data.
Python
-
sibling-variation-paper-2022
sibling-variation-paper-2022 PublicPublic reference repo for the paper "Sibling Variation in Phenotype and Genotype: Polygenic Trait Distributions and DNA Recombination Mapping with UK Biobank and IVF Family Data".
Repositories
- biobank-scale-methods-paper-2023 Public
Public repository accompanying the publication "Biobank-scale methods and projections for sparse polygenic prediction from machine learning", containing code and predictors.
- sibling-variation-paper-2022 Public
Public reference repo for the paper "Sibling Variation in Phenotype and Genotype: Polygenic Trait Distributions and DNA Recombination Mapping with UK Biobank and IVF Family Data".
- biomarker-paper-2021 Public
Public reference code for the paper "Machine Learning Prediction of Blood and Urine Biomarkers from Genotype and of Disease Risk from Biomarkers in the UK Biobank".
- lassoPipeline Public
This is the set of scripts that will subset phenotype files, create training/validation/testing sets, run gwas, run lasso and then score the final lasso output using genetic data.
