Update MZQC_in_5_minutes.ipynb

more ref removal to make binder work and keep ipynb example in sync with the schema of the branches lib implementation version
MS-Quality-Hub · Oct 28, 2021 · 9337736 · 9337736
1 parent bb63b3c
commit 9337736
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/jupyter/MZQC_in_5_minutes.ipynb b/jupyter/MZQC_in_5_minutes.ipynb
@@ -177,10 +177,10 @@
     }
    ],
    "source": [
-    "qm1 = qc.QualityMetric(cvRef=\"QC\", accession=\"QC:0000000\", name=\"Mass error sigma\", value=np.std(dm))\n",
+    "qm1 = qc.QualityMetric(accession=\"QC:0000000\", name=\"Mass error sigma\", value=np.std(dm))\n",
     "\n",
     "q1,q2,q3 = np.quantile(dm, [0.25,0.5,0.75])\n",
-    "qm2 = qc.QualityMetric(cvRef=\"QC\", accession=\"QC:0000000\", name=\"Mass error Q1, Q2, Q3\", value=(q1,q2,q3))\n",
+    "qm2 = qc.QualityMetric(accession=\"QC:0000000\", name=\"Mass error Q1, Q2, Q3\", value=(q1,q2,q3))\n",
     "\n",
     "print(\"Mass error Q1={}, Q2={}, Q3={}, sigma={}\".format(qm2.value[0],qm2.value[1],qm2.value[2],qm1.value))"
    ]
@@ -300,9 +300,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "cv_qc = qc.ControlledVocabulary(ref=\"QC\", name=\"Proteomics Standards Initiative Quality Control Ontology\",version=\"0.1.0\", uri=\"https://github.com/HUPO-PSI/qcML-development/blob/master/cv/v0_1_0/qc-cv.obo\")\n",
+    "cv_qc = qc.ControlledVocabulary(name=\"Proteomics Standards Initiative Quality Control Ontology\",version=\"0.1.0\", uri=\"https://github.com/HUPO-PSI/qcML-development/blob/master/cv/v0_1_0/qc-cv.obo\")\n",
     "\n",
-    "cv_ms = qc.ControlledVocabulary(ref=\"MS\", name=\"Proteomics Standards Initiative Mass Spectrometry Ontology\",version=\"4.1.7\", uri=\"https://github.com/HUPO-PSI/psi-ms-CV/blob/master/psi-ms.obo\")"
+    "cv_ms = qc.ControlledVocabulary(name=\"Proteomics Standards Initiative Mass Spectrometry Ontology\",version=\"4.1.7\", uri=\"https://github.com/HUPO-PSI/psi-ms-CV/blob/master/psi-ms.obo\")"
    ]
   },
   {