Merge pull request #31 from telatin/fix-imgs

Fix broken img urls
MRC-CLIMB · Mar 22, 2024 · e2b1b76 · e2b1b76
2 parents b93ed5f + 268ffeb
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diff --git a/docs/walkthroughs/nextflow-custom-workflows/nextflow-custom.md b/docs/walkthroughs/nextflow-custom-workflows/nextflow-custom.md
@@ -9,11 +9,11 @@ Suggested reading before starting this tutorial:
 
 Workflow management systems such as Nextflow can be used to create reproducible and scalable workflows. This tutorial consists of taking a test pipeline with the following workflow:
 
-<img src="../../img/workflow1.png" alt= "Workflow1" height="400">
+<img src="../../../img/workflow1.png" alt= "Workflow1" height="400">
 
 And modifying and extending it to follow this workflow:
 
-<img src="../../img/workflow2.png" alt= "Workflow2" height="500">
+<img src="../../../img/workflow2.png" alt= "Workflow2" height="500">
 
 ## TASK 1: Try running the test pipeline
 

diff --git a/docs/walkthroughs/nfcore.md b/docs/walkthroughs/nfcore.md
@@ -13,7 +13,9 @@ Some examples of nf-core pipelines include:
 * [nf-core/taxprofiler](https://nf-co.re/taxprofiler/): to run multiple taxonomy profiling tools on a metagenomics dataset
 * [nf-core/mag](https://nf-co.re/mag/): to assemble and bin whole metagenome sequencing runs
 
-See the full list [online](https://nf-co.re/pipelines).
+* See the full list [online](https://nf-co.re/pipelines).
+
+* 💡 See also [Using Nextflow](../../notebook-servers/using-nextflow)
 
 ## How to run a nf-core pipeline?
 
@@ -70,7 +72,7 @@ nextflow run nf-core/fetchngs -r 1.12.0 \
 
 Example execution:
 
-<img src="../img/nf-fetch-run.png" alt="nf-core fetchngs execution" height="500">
+<img src="../../img/nf-fetch-run.png" alt="nf-core fetchngs execution" height="500">
 
 ## S3 buckets
 

diff --git a/docs/walkthroughs/qiime2.md b/docs/walkthroughs/qiime2.md
@@ -4,7 +4,7 @@
 
 QIIME 2 ([Boylan et al., 2019](https://www.nature.com/articles/s41587-019-0209-9)) is a microbiome analysis package with an emphasis on data transparency. In short it allows for end-to-end analysis, including demupltiplexing, noise correction, taxonomic classification, phylogeny inference and plotting. Below is a flow chart of the conceptual outline of QIIME 2 (courtesy of the authors, found [here](https://docs.qiime2.org/2023.7/tutorials/overview/)).
 
-<img src="../img/qiime.png" alt= "Qiime">
+<img src="../../img/qiime.png" alt= "Qiime">
 
 ## Installation