Skip to content

bump version to 2.9 #88

bump version to 2.9

bump version to 2.9 #88

Workflow file for this run

name: Run tests and upload to docker hub
on: [push]
jobs:
run-tests:
runs-on: ubuntu-latest
strategy:
matrix:
# python-version: [3.8, 3.9] # too many calls to zenodo download -> request limit
python-version: [3.8]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{matrix.python-version}}
uses: actions/setup-python@v2
with:
python-version: ${{matrix.python-version}}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install pytest Cython
pip install torch==1.8.1+cpu -f https://download.pytorch.org/whl/torch_stable.html
pip install .
- name: Run test script
run: ./tests.sh
shell: bash
# - name: Build Docker image
# run: docker build -t wasserth/tractseg_container:master -f Dockerfile_CPU .
# - name: Check build dir
# run: echo $(pwd)
# - name: Run Docker image
# run: docker run -v $(pwd)/examples:/data wasserth/tractseg_container:master TractSeg \-i /data/Diffusion.nii.gz -o /data/docker_test --raw_diffusion_input --single_orientation
# - name: Test csd peaks
# run: pytest -v tests/test_end_to_end.py::test_end_to_end::test_csd_peaks
# - name: Test tractseg docker
# run: pytest -v tests/test_end_to_end.py::test_end_to_end::test_tractseg_output_docker
# upload-dockerhub:
# runs-on: ubuntu-latest
# needs: run-tests
# if: success() && github.ref == 'refs/heads/master'
# strategy:
# matrix:
# python-version: [3.8]
# steps:
# - uses: actions/checkout@v2
# - name: Login to Docker Hub
# uses: docker/login-action@v1
# with:
# username: ${{ secrets.DOCKER_HUB_USERNAME }}
# password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
# - name: Set up Docker Buildx
# uses: docker/setup-buildx-action@v1
# - name: Build and push
# uses: docker/build-push-action@v2
# with:
# context: .
# file: ./Dockerfile_CPU
# push: true
# tags: ${{ secrets.DOCKER_HUB_USERNAME }}/tractseg_container:master