CerebralCortex-2.0-legacy

Cerebral Cortex is the big data cloud companion of mCerebrum designed to support population-scale data analysis, visualization, model development, and intervention design for mobile sensor data.

Cerebral Cortex is the backend architecture, powered by Apache Spark, that is designed to analyze population-scale mHealth data

You can find more information about MD2K software on our software website or the MD2K organization on our MD2K website.

Examples

Intellij Setup

Environment Variables in Run Configuration

• PYTHONPATH=/Users/hnat/Downloads/spark-2.0.2-bin-hadoop2.7/python:/Users/hnat/Downloads/spark-2.0.2-bin-hadoop2.7/python/lib/py4j-0.10.3-src.zip
• SPARK_HOME=/Users/hnat/Downloads/spark-2.0.2-bin-hadoop2.7/
• PYSPARK_SUBMIT_ARGS=--packages com.datastax.spark:spark-cassandra-connector_2.11:2.0.1 pyspark-shell

Add pyspark.zip to your project libraries:

http://stackoverflow.com/questions/13994846/intellij-python-plugin-run-classpath

• Go to File -> Project Structure
• Now select Modules and then "Dependencies" tab
• Click the "+" icon and select "Library"
• Click "New Library" and select Java (I know it's weird...)
• Now choose multiple modules / egg and "OK".
• Select "Classes" from categories.
• Give your new library a name, "My Python not Java Library"
• And finally click "Add Selected"

Contributing

Please read our Contributing Guidelines for details on the process for submitting pull requests to us.

We use the Python PEP 8 Style Guide.

Our Code of Conduct is the Contributor Covenant.

Bug reports can be submitted through JIRA.

Our discussion forum can be found here.

Versioning

We use Semantic Versioning for versioning the software which is based on the following guidelines.

MAJOR.MINOR.PATCH (example: 3.0.12)

1. MAJOR version when incompatible API changes are made,
2. MINOR version when functionality is added in a backwards-compatible manner, and
3. PATCH version when backwards-compatible bug fixes are introduced.

For the versions available, see this repository's tags.

Contributors

Link to the list of contributors who participated in this project.

License

This project is licensed under the BSD 2-Clause - see the license file for details.

Acknowledgments

• National Institutes of Health - Big Data to Knowledge Initiative
  • Grants: R01MD010362, 1UG1DA04030901, 1U54EB020404, 1R01CA190329, 1R01DE02524, R00MD010468, 3UH2DA041713, 10555SC
• National Science Foundation
  • Grants: 1640813, 1722646
• Intelligence Advanced Research Projects Activity
  • Contract: 2017-17042800006