MetaBatch Analyzer

• Rehan Akbani (owner)
• John Weinstein
• Bradley Broom
• Tod Casasent (developer)

MetaBatch Analyzer is an HTTP GUI interface to a MetaBatch Analyzer (MBA) Docker Compose Stack. MBA includes images for a GUI component, an MBatch processing component, a Viewer and analysis component, and a component for downloading and converting GDC data for use with MBA.

MetaBatch Analyzer Docker Quick Start

Download the docker-compose.yml file at the root of this repository. This file is setup for use on Linux.

Make the following directories.

• /MBA/OUTPUT
• /MBA/PROPS
• /MBA/UTIL
• /MBA/WEBSITE
• /MBA/MW_CACHE
• /MBA/MW_ZIP

1. Copy the contents of inst/ext/MW_CACHE into /MBA/MW_CACHE.
2. Copy the contents of inst/ext/OUTPUT into /MBA/OUTPUT.
3. Copy the contents of inst/ext/PROPS into /MBA/PROPS.
4. Copy the contents of inst/ext/UTIL into /MBA/UTIL.
5. Copy the contents of inst/ext/WEBSITE into /MBA/WEBSITE.

Permissions or ownership of the directories may need to be changed or matched to the Docker image user 2004.

In the directory with the docker-compose.yml file run:

docker compose -p mbahub -f docker-compose.yml up --no-build -d

You can stop it with:

docker compose -p mbahub -f docker-compose.yml down

To connect to the MBatch Omic Browser with:

localhost:8080/MBA/MBA

For educational and research purposes only.

Funding This work was supported in part by U.S. National Cancer Institute (NCI) grant: Weinstein, Broom, Akbani. Computational Tools for Analysis and Visualization of Quality Control Issues in Metabolomic Data, U01CA235510