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21 Open 88 Closed
21 Open 88 Closed
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Issues list

improve storage usage, minimize duplication of FASTQ data enhancement New feature or request
#109 opened Dec 3, 2023 by gpertea
@gpertea
2
Create a contribution guidelines documentation enhancement New feature or request
#108 opened Dec 2, 2023 by lcolladotor
@Nick-Eagles
Add QC metrics generated by Monorail / recount3 enhancement New feature or request
#106 opened Nov 30, 2023 by lcolladotor bioc v3.23
Add support for MultiQC and maybe other tools enhancement New feature or request
#105 opened Nov 30, 2023 by lcolladotor bioc v3.23
Translate course and intro documentation to Spanish enhancement New feature or request
#104 opened Nov 30, 2023 by lcolladotor bioc v3.23
Videos documenting how to install and run SPEAQeasy + describing outputs enhancement New feature or request
#103 opened Nov 30, 2023 by lcolladotor bioc v3.23
Develop a 1 day (max 2) workshop enhancement New feature or request
#102 opened Nov 30, 2023 by lcolladotor bioc v3.22
Guide for all setups that are atypical in some way enhancement New feature or request
#101 opened Nov 30, 2023 by lcolladotor bioc v3.20
[JHPCE] repeated fastqc failure on trimmed paired data bug Something isn't working
#100 opened Oct 20, 2023 by gpertea
15
Improve or clarify what's supported for custom annotation enhancement New feature or request
#97 opened Aug 7, 2023 by Nick-Eagles bioc v3.20
Add support for more executors enhancement New feature or request
#96 opened Aug 7, 2023 by Nick-Eagles bioc v3.21
allow starting the workflow with existing read alignments (sorted BAM/CRAM files) enhancement New feature or request
#92 opened Mar 3, 2023 by gpertea bioc v3.21
3
Add support for running SPEAQeasy with one sample bug Something isn't working
#91 opened Jan 20, 2023 by Nick-Eagles bioc v3.20
Create Unit Tests enhancement New feature or request
#81 opened Dec 8, 2021 by Nick-Eagles bioc v3.21
Some metrics from FastQC are not documented enhancement New feature or request
#80 opened Nov 23, 2021 by Nick-Eagles bioc v3.20
Choose whether alignment and/or pseudoalignment are run enhancement New feature or request
#77 opened Sep 27, 2021 by Nick-Eagles bioc v3.22
@Nick-Eagles
Rename exons with meaningful, unique IDs bug Something isn't working enhancement New feature or request
#76 opened Aug 19, 2021 by Nick-Eagles bioc v3.20
Allocate reasonable memory for counts step on computing clusters enhancement New feature or request
#73 opened Jun 15, 2021 by Nick-Eagles bioc v3.22
1
Clean up output from generate_logs.sh
#65 opened Jan 8, 2021 by Nick-Eagles
@Nick-Eagles
1
More robust testing across platforms needed with GHA enhancement New feature or request
#61 opened Oct 5, 2020 by Nick-Eagles bioc v3.21
Check and maybe add rat-human genome version enhancement New feature or request
#20 opened May 15, 2019 by lcolladotor bioc v3.22
@emilyburke @Nick-Eagles
3
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