Kaido0/Brain-Tissue-Segment-Keras
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# Brain-Tissue-Segment-Keras Network: FCN, UNet, Unet+Resblock(DeepUNet), Squeeze+UNet, DenseNet+UNet(DenseUNet)... using small patch_size(32,32) ------------------------------------------------------------------------------------------- ---config.py: Set parameters Including:PATCH_SIZE,MODEL_TYPE,BATCH_SIZE... ---data_handling_2d_patch.py Make Training Set and Validation Set output:2d_patch/ ---train_main_2d_patch.py main function output: outputs/ (you can see model.h5 and result.csv) output: logs/ (you can see loss curve in tensorboard) tensorboard --logdir=logs ---predict_test_2d.py poutput: predict/(you can see the predicted result of Test Set) ----------------------------------------------------------------------------------------- Some Reference(just reference!!! not absolutely same!) UNet+ResBlock(DeepUNet): https://arxiv.org/pdf/1711.10684.pdf DenseNet+UNet: https://arxiv.org/pdf/1611.09326.pdf Squeeze+UNet https://arxiv.org/abs/1602.07360
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Network: FCN, U-Net, Unet+Resblock(DeepUNet), Squeeze+UNet, DenseNet+UNet(DenseUnet)...
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