MULTILAYER Docker version

This is a docker version of MULTILAYER (tool for spatial transcriptomics analysis).

Do you want more informations about MULTILAYER ? Please visit MULTILAYER's GitHub.

Versions of libraries :

• numpy = 1.19.3
• matplotlib = 3.3.2
• pandas = 1.1.4
• scipy = 1.5.4
• scikit-learn = 0.23.2
• seaborn = 0.11.0
• networkx = 2.5
• python-louvain = 0.14
• pillow = 8.0.1

How to launch Multilayer with Docker ? (Step by step tutorial)

Docker should be previously installed.

Start Docker service

systemctl start docker

Check if Docker is active (it should be active)

systemctl is-active docker

Pull the docker image from DockerHub

docker pull hyperionju/spatial_multilayer

You should have now an image called 'hyperionju/spatial_multilayer', you can check with :

docker images

Need to allow the communication between Docker & X server (Graphical application)

xhost +local:docker

Then you can run and enjoy.

docker run -it --rm -v /tmp/.X11-unix:/tmp/.X11-unix -e DISPLAY=$DISPLAY hyperionju/spatial_multilayer