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Implement multilayer community detection algorithms #94

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pitmonticone opened this issue Jan 14, 2023 · 2 comments
Open

Implement multilayer community detection algorithms #94

pitmonticone opened this issue Jan 14, 2023 · 2 comments
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@pitmonticone @ClaudMor
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enhancement New feature or request. particular algorithm Label to be given to issues related to particular algorithms

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@pitmonticone
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pitmonticone commented Jan 14, 2023 •
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See De Domenico et al. (2015).
@pitmonticone pitmonticone added the enhancement New feature or request. label Jan 14, 2023
@InterdisciplinaryPhysicsTeam InterdisciplinaryPhysicsTeam added the particular algorithm Label to be given to issues related to particular algorithms label Jan 26, 2023
@TomKellyGenetics
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Suggestion. The following community detection algorithms are popular in social and life sciences.

Louvain algorithm (Blondel et al., 2008).
https://doi.org/10.1088/1742-5468/2008/10/P10008

Leiden algorithm (Traag et al., 2019).
https://doi.org/10.1038/s41598-019-41695-z

Note that the Leiden algorithm supports Multilayer graphs in R leiden and Python leidenalg. In principle it should be possible to port this functionality to Julia. It would take considerable effort but the performance advantages of Julia would be beneficial on large datasets (e.g,. single-cell transcriptomics and epigenomics).

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pitmonticone commented Mar 7, 2023 •
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Thank you @TomKellyGenetics for your relevant suggestion.

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@ClaudMor ClaudMor

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@TomKellyGenetics @pitmonticone @ClaudMor @InterdisciplinaryPhysicsTeam