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bdTreeSim
bdTreeSim PublicSimulate phylogenetic trees from a birth-death model conditioned on sampling times
R
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periodic-bottlenecks
periodic-bottlenecks PublicSupporting code for the paper 'Bottlenecks can constrain and channel evolutionary paths'
Jupyter Notebook
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PPMmodelPangenome
PPMmodelPangenome PublicInference tool for the Persistent-Private-Mobile model of bacterial pangenome evolution.
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