-
Notifications
You must be signed in to change notification settings - Fork 4
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Simulation docs #32
Open
aauss
wants to merge
11
commits into
master
Choose a base branch
from
simulation_docs
base: master
Could not load branches
Branch not found: {{ refName }}
Could not load tags
Nothing to show
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Open
Simulation docs #32
Commits on Oct 6, 2020
-
Configuration menu - View commit details
-
Copy full SHA for e09fc6e - Browse repository at this point
Copy the full SHA e09fc6eView commit details -
Configuration menu - View commit details
-
Copy full SHA for 7b6a855 - Browse repository at this point
Copy the full SHA 7b6a855View commit details -
Configuration menu - View commit details
-
Copy full SHA for 605938e - Browse repository at this point
Copy the full SHA 605938eView commit details
Commits on Oct 7, 2020
-
Configuration menu - View commit details
-
Copy full SHA for 5bc5142 - Browse repository at this point
Copy the full SHA 5bc5142View commit details
Commits on Jun 14, 2023
-
Update simulations docs for PR #32
Based on comments from JarnoRFB in #32 I have updated a few phrases and rewrote the introduction as it was too unfounded. Looking at the literature, I found that simulations are also beneficial due to known outbreak properties, which makes evaluation possible in the first place in certain situations.
Configuration menu - View commit details
-
Copy full SHA for 698cb83 - Browse repository at this point
Copy the full SHA 698cb83View commit details -
Update pre-commit file due to deprecations.
- Flake8 has moved to GitHub: see https://pre-commit.com/hooks.html - Changed exclude since it is regex and not glob: pre-commit/pre-commit#1702 - pre-commit assumes immutable ref. Thus, this commit changes black's ref to a fixed version number. Using an unpinned latest version is not encouraged.
Configuration menu - View commit details
-
Copy full SHA for 0f3e0a2 - Browse repository at this point
Copy the full SHA 0f3e0a2View commit details -
Update libraries due to breaking versions.
Major version in sphinx-bibtex is incompatible with this library's sphinx version. This commit restricts the version number: executablebooks/jupyter-book#1137 (comment) The latest release of jinja2 introduces was not compatible with this library's sphinx version. This commit restricts the version number: readthedocs/readthedocs.org#9038 (comment) isort is used in pre-commit hook but does not come with the requirements-dev.txt. This commit adds it to have it available during development. Building the docs with a Jupyter notebook in it requires pandoc. The README is updated to include an installation instruction. Using conda is suggested in this stackoverflow question: https://stackoverflow.com/questions/62398231/building-docs-fails-due-to-missing-pandoc
Configuration menu - View commit details
-
Copy full SHA for 2663f56 - Browse repository at this point
Copy the full SHA 2663f56View commit details -
Fix failing tests and formatting in simulations.
test_simulations.py was throwing dtype errors since sometimes, n_cases was int_32 and sometimes int_64. With this commit, data type is casted to pass the unit test. Imports were not sorted correctly according to isort which was fixed. Docstring of simulate was miswritten and missed a "s". This commit fixes it.
Configuration menu - View commit details
-
Copy full SHA for dd9534b - Browse repository at this point
Copy the full SHA dd9534bView commit details -
Configuration menu - View commit details
-
Copy full SHA for 967ef07 - Browse repository at this point
Copy the full SHA 967ef07View commit details
Commits on Jun 26, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 51ec6a0 - Browse repository at this point
Copy the full SHA 51ec6a0View commit details
Commits on Jul 24, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 06b7f30 - Browse repository at this point
Copy the full SHA 06b7f30View commit details
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.