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v1.0.0 (2022 NAR paper)

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@JamieHeather JamieHeather released this 27 Mar 04:08
· 53 commits to main since this release
v1.0.0
7a69015

First release. as described in the 2022 NAR paper:

  • stitchr = CLI single TCR chain production for all loci (TRA/TRB/TRG/TRD) and species combinations currently available in IMGT
  • thimble = CLI wrapper to provide a TSV file to run stitchr high-throughput, potentially pairing (TRA-TRB or TRG-TRD)
  • gui-stitchr= GUI interface to run stitchr interactively, on either single chains or single pairs
  • functions = support script to the other three

Note that this release also includes an exe file which can be used to run the gui-stitchr script on Windows machines without any need to interact with Python. This was created using pyinstaller, and just bundles together all the required packages. It must be run from within the Scripts directory, as with the regular scripts. While it's been tested on several machines, this is not as actively maintained as the core scripts, and is included here for users who don't wish to engage with the command line even a little.

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