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Update documentation
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JSchoeberl committed Apr 20, 2024
1 parent d280fbc commit 7ea6396
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2 changes: 1 addition & 1 deletion .buildinfo
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@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: aaf507b465f6cd264de90813662a9560
config: 53e8877b39edea965bbf83cfcff44bba
tags: 645f666f9bcd5a90fca523b33c5a78b7
167 changes: 84 additions & 83 deletions DG/Nitsche.html

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133 changes: 67 additions & 66 deletions DG/elliptic.html

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139 changes: 70 additions & 69 deletions DG/fourthorder.html

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133 changes: 67 additions & 66 deletions DG/instationary.html

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131 changes: 66 additions & 65 deletions DG/splitting.html

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117 changes: 59 additions & 58 deletions FEM/erroranalysis.html

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115 changes: 58 additions & 57 deletions FEM/finiteelements.html

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121 changes: 61 additions & 60 deletions FEM/myassembling.html

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115 changes: 58 additions & 57 deletions FEM/systemassembling.html

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135 changes: 68 additions & 67 deletions MPIparallel/PETSc_interface.html

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185 changes: 93 additions & 92 deletions MPIparallel/distmesh.html

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115 changes: 58 additions & 57 deletions MPIparallel/hdivnstsimple/NavierStokesMT.html

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115 changes: 58 additions & 57 deletions MPIparallel/hdivnstsimple/veclaplace-auxiliary.html

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115 changes: 58 additions & 57 deletions MPIparallel/hdivnstsimple/veclaplace.html

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149 changes: 75 additions & 74 deletions MPIparallel/intro.html

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331 changes: 166 additions & 165 deletions MPIparallel/paralleliteration.html

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133 changes: 67 additions & 66 deletions MPIparallel/parallelstokes.html

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115 changes: 58 additions & 57 deletions README.html

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264 changes: 264 additions & 0 deletions _sources/pversion/myhighorder.ipynb

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2 changes: 1 addition & 1 deletion _static/basic.css
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
*
* Sphinx stylesheet -- basic theme.
*
* :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
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2 changes: 1 addition & 1 deletion _static/doctools.js
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
*
* Base JavaScript utilities for all Sphinx HTML documentation.
*
* :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
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4 changes: 2 additions & 2 deletions _static/language_data.js
Original file line number Diff line number Diff line change
Expand Up @@ -5,15 +5,15 @@
* This script contains the language-specific data used by searchtools.js,
* namely the list of stopwords, stemmer, scorer and splitter.
*
* :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/

var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];


/* Non-minified version is copied as a separate JS file, is available */
/* Non-minified version is copied as a separate JS file, if available */

/**
* Porter Stemmer
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165 changes: 105 additions & 60 deletions _static/searchtools.js
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
*
* Sphinx JavaScript utilities for the full-text search.
*
* :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
Expand Down Expand Up @@ -99,7 +99,7 @@ const _displayItem = (item, searchTerms, highlightTerms) => {
.then((data) => {
if (data)
listItem.appendChild(
Search.makeSearchSummary(data, searchTerms)
Search.makeSearchSummary(data, searchTerms, anchor)
);
// highlight search terms in the summary
if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js
Expand All @@ -116,8 +116,8 @@ const _finishSearch = (resultCount) => {
);
else
Search.status.innerText = _(
`Search finished, found ${resultCount} page(s) matching the search query.`
);
"Search finished, found ${resultCount} page(s) matching the search query."
).replace('${resultCount}', resultCount);
};
const _displayNextItem = (
results,
Expand All @@ -137,6 +137,22 @@ const _displayNextItem = (
// search finished, update title and status message
else _finishSearch(resultCount);
};
// Helper function used by query() to order search results.
// Each input is an array of [docname, title, anchor, descr, score, filename].
// Order the results by score (in opposite order of appearance, since the
// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically.
const _orderResultsByScoreThenName = (a, b) => {
const leftScore = a[4];
const rightScore = b[4];
if (leftScore === rightScore) {
// same score: sort alphabetically
const leftTitle = a[1].toLowerCase();
const rightTitle = b[1].toLowerCase();
if (leftTitle === rightTitle) return 0;
return leftTitle > rightTitle ? -1 : 1; // inverted is intentional
}
return leftScore > rightScore ? 1 : -1;
};

/**
* Default splitQuery function. Can be overridden in ``sphinx.search`` with a
Expand All @@ -160,13 +176,26 @@ const Search = {
_queued_query: null,
_pulse_status: -1,

htmlToText: (htmlString) => {
htmlToText: (htmlString, anchor) => {
const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html');
htmlElement.querySelectorAll(".headerlink").forEach((el) => { el.remove() });
for (const removalQuery of [".headerlinks", "script", "style"]) {
htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() });
}
if (anchor) {
const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`);
if (anchorContent) return anchorContent.textContent;

console.warn(
`Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.`
);
}

// if anchor not specified or not found, fall back to main content
const docContent = htmlElement.querySelector('[role="main"]');
if (docContent !== undefined) return docContent.textContent;
if (docContent) return docContent.textContent;

console.warn(
"Content block not found. Sphinx search tries to obtain it via '[role=main]'. Could you check your theme or template."
"Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template."
);
return "";
},
Expand Down Expand Up @@ -239,16 +268,7 @@ const Search = {
else Search.deferQuery(query);
},

/**
* execute search (requires search index to be loaded)
*/
query: (query) => {
const filenames = Search._index.filenames;
const docNames = Search._index.docnames;
const titles = Search._index.titles;
const allTitles = Search._index.alltitles;
const indexEntries = Search._index.indexentries;

_parseQuery: (query) => {
// stem the search terms and add them to the correct list
const stemmer = new Stemmer();
const searchTerms = new Set();
Expand Down Expand Up @@ -284,16 +304,32 @@ const Search = {
// console.info("required: ", [...searchTerms]);
// console.info("excluded: ", [...excludedTerms]);

// array of [docname, title, anchor, descr, score, filename]
let results = [];
return [query, searchTerms, excludedTerms, highlightTerms, objectTerms];
},

/**
* execute search (requires search index to be loaded)
*/
_performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => {
const filenames = Search._index.filenames;
const docNames = Search._index.docnames;
const titles = Search._index.titles;
const allTitles = Search._index.alltitles;
const indexEntries = Search._index.indexentries;

// Collect multiple result groups to be sorted separately and then ordered.
// Each is an array of [docname, title, anchor, descr, score, filename].
const normalResults = [];
const nonMainIndexResults = [];

_removeChildren(document.getElementById("search-progress"));

const queryLower = query.toLowerCase();
const queryLower = query.toLowerCase().trim();
for (const [title, foundTitles] of Object.entries(allTitles)) {
if (title.toLowerCase().includes(queryLower) && (queryLower.length >= title.length/2)) {
if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) {
for (const [file, id] of foundTitles) {
let score = Math.round(100 * queryLower.length / title.length)
results.push([
normalResults.push([
docNames[file],
titles[file] !== title ? `${titles[file]} > ${title}` : title,
id !== null ? "#" + id : "",
Expand All @@ -308,46 +344,47 @@ const Search = {
// search for explicit entries in index directives
for (const [entry, foundEntries] of Object.entries(indexEntries)) {
if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) {
for (const [file, id] of foundEntries) {
let score = Math.round(100 * queryLower.length / entry.length)
results.push([
for (const [file, id, isMain] of foundEntries) {
const score = Math.round(100 * queryLower.length / entry.length);
const result = [
docNames[file],
titles[file],
id ? "#" + id : "",
null,
score,
filenames[file],
]);
];
if (isMain) {
normalResults.push(result);
} else {
nonMainIndexResults.push(result);
}
}
}
}

// lookup as object
objectTerms.forEach((term) =>
results.push(...Search.performObjectSearch(term, objectTerms))
normalResults.push(...Search.performObjectSearch(term, objectTerms))
);

// lookup as search terms in fulltext
results.push(...Search.performTermsSearch(searchTerms, excludedTerms));
normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms));

// let the scorer override scores with a custom scoring function
if (Scorer.score) results.forEach((item) => (item[4] = Scorer.score(item)));

// now sort the results by score (in opposite order of appearance, since the
// display function below uses pop() to retrieve items) and then
// alphabetically
results.sort((a, b) => {
const leftScore = a[4];
const rightScore = b[4];
if (leftScore === rightScore) {
// same score: sort alphabetically
const leftTitle = a[1].toLowerCase();
const rightTitle = b[1].toLowerCase();
if (leftTitle === rightTitle) return 0;
return leftTitle > rightTitle ? -1 : 1; // inverted is intentional
}
return leftScore > rightScore ? 1 : -1;
});
if (Scorer.score) {
normalResults.forEach((item) => (item[4] = Scorer.score(item)));
nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item)));
}

// Sort each group of results by score and then alphabetically by name.
normalResults.sort(_orderResultsByScoreThenName);
nonMainIndexResults.sort(_orderResultsByScoreThenName);

// Combine the result groups in (reverse) order.
// Non-main index entries are typically arbitrary cross-references,
// so display them after other results.
let results = [...nonMainIndexResults, ...normalResults];

// remove duplicate search results
// note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept
Expand All @@ -361,7 +398,12 @@ const Search = {
return acc;
}, []);

results = results.reverse();
return results.reverse();
},

query: (query) => {
const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query);
const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms);

// for debugging
//Search.lastresults = results.slice(); // a copy
Expand Down Expand Up @@ -466,14 +508,18 @@ const Search = {
// add support for partial matches
if (word.length > 2) {
const escapedWord = _escapeRegExp(word);
Object.keys(terms).forEach((term) => {
if (term.match(escapedWord) && !terms[word])
arr.push({ files: terms[term], score: Scorer.partialTerm });
});
Object.keys(titleTerms).forEach((term) => {
if (term.match(escapedWord) && !titleTerms[word])
arr.push({ files: titleTerms[word], score: Scorer.partialTitle });
});
if (!terms.hasOwnProperty(word)) {
Object.keys(terms).forEach((term) => {
if (term.match(escapedWord))
arr.push({ files: terms[term], score: Scorer.partialTerm });
});
}
if (!titleTerms.hasOwnProperty(word)) {
Object.keys(titleTerms).forEach((term) => {
if (term.match(escapedWord))
arr.push({ files: titleTerms[term], score: Scorer.partialTitle });
});
}
}

// no match but word was a required one
Expand All @@ -496,9 +542,8 @@ const Search = {

// create the mapping
files.forEach((file) => {
if (fileMap.has(file) && fileMap.get(file).indexOf(word) === -1)
fileMap.get(file).push(word);
else fileMap.set(file, [word]);
if (!fileMap.has(file)) fileMap.set(file, [word]);
else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word);
});
});

Expand Down Expand Up @@ -549,8 +594,8 @@ const Search = {
* search summary for a given text. keywords is a list
* of stemmed words.
*/
makeSearchSummary: (htmlText, keywords) => {
const text = Search.htmlToText(htmlText);
makeSearchSummary: (htmlText, keywords, anchor) => {
const text = Search.htmlToText(htmlText, anchor);
if (text === "") return null;

const textLower = text.toLowerCase();
Expand Down

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