CI: Use Netlify for notebooks tests

.github/workflows/notebooks-test.yml

@@ -0,0 +1,25 @@
+name: Notebooks tests
+
+on: [push, pull_request]
+
+jobs:
+  test-elastix:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set Up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.7
+      - run: |
+          cd examples
+          pip install -r requirements.txt
+          pip install pytest-tornasync
+          python -m ipykernel install --user --name elastixenv
+          pip install pytest 'nbmake[html]'
+      - run: |
+          pytest --nbmake --path-output=.
+#       - if: failure()
+      - run: |
+          netlify deploy --dir=_build/html --auth=${{ secrets.NETLIFY_TOKEN }} --site=${{ secrets.NETLIFY_SITE_API_ID }}
+

examples/ITK_Example10_Transformix_Jacobian.ipynb

@@ -186,9 +186,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "ElastixEnv2",
+   "display_name": "ElastixEnv",
    "language": "python",
-   "name": "elastixenv2"
+   "name": "elastixenv"
   },
   "language_info": {
    "codemirror_mode": {
@@ -200,7 +200,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.9"
+   "version": "3.8.5"
   }
  },
  "nbformat": 4,

examples/ITK_Example11_Transformix_DeformationField.ipynb

@@ -265,9 +265,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "ElastixEnv2",
+   "display_name": "ElastixEnv",
    "language": "python",
-   "name": "elastixenv2"
+   "name": "elastixenv"
   },
   "language_info": {
    "codemirror_mode": {
@@ -279,7 +279,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.9"
+   "version": "3.8.5"
   }
  },
  "nbformat": 4,

examples/ITK_UnitTestExample1_RigidRegistration.ipynb

@@ -121,9 +121,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "ITKTestEnvDebug",
+   "display_name": "ElastixEnv",
    "language": "python",
-   "name": "itktestenvdebug"
+   "name": "elastixenv"
   },
   "language_info": {
    "codemirror_mode": {
@@ -135,7 +135,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.9"
+   "version": "3.8.5"
   }
  },
  "nbformat": 4,

examples/ITK_UnitTestExample2_AffineRegistration.ipynb

@@ -122,9 +122,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "ITKTestEnvDebug",
+   "display_name": "ElastixEnv",
    "language": "python",
-   "name": "itktestenvdebug"
+   "name": "elastixenv"
   },
   "language_info": {
    "codemirror_mode": {
@@ -136,7 +136,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.9"
+   "version": "3.8.5"
   }
  },
  "nbformat": 4,

examples/ITK_UnitTestExample6_PointSetTransformation.ipynb

@@ -162,9 +162,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "ITKTestEnvDebug",
+   "display_name": "ElastixEnv",
    "language": "python",
-   "name": "itktestenvdebug"
+   "name": "elastixenv"
   },
   "language_info": {
    "codemirror_mode": {
@@ -176,7 +176,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.9"
+   "version": "3.8.5"
   }
  },
  "nbformat": 4,

examples/requirements.txt

@@ -1,4 +1,4 @@
-itk-elastix>=0.7.0
+itk-elastix>=0.8.0
 itk==5.1.1.post1
 itk-core==5.1.1.post1
 itk-numerics==5.1.1.post1
@@ -7,8 +7,9 @@ itk-registration==5.1.1.post1
 itk-segmentation==5.1.1.post1
 itkwidgets>=0.32.0
 jupyterlab==1.2.5
-imageio
+imageio>=2.5.0
 ipywidgets>=7.5.1
-ipympl>=0.4.1
-voila>=0.1.21
-pyinstaller
+ipympl==0.5.7
+voila>=0.2.3
+pyinstaller>=4.0
+sphinxcontrib-bibtex==1.0.0