Merge pull request #278 from InsightSoftwareConsortium/itk-5.4rc03

Itk 5.4rc03+patches+pyproject.toml-stable-abi-wheels--macos-arm

.github/workflows/build-test-package.yml

@@ -4,21 +4,21 @@ on: [push,pull_request]
 
 jobs:
   cxx-build-workflow:
-    uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-cxx.yml@3f63de316255a285b0cac4c819d3d45649738999
+    uses: thewtex/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-cxx.yml@e15be287b1e1940b51e38fd6c8e0a32cfe629154
 
   python-build-workflow-dev:
     if: github.ref != 'refs/heads/master' && github.ref != 'refs/heads/main' && !startsWith(github.ref, 'refs/tags')
-    uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-package-python.yml@3f63de316255a285b0cac4c819d3d45649738999
+    uses: thewtex/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-package-python.yml@e15be287b1e1940b51e38fd6c8e0a32cfe629154
     with:
       python3-minor-versions: '["8","11"]'
       manylinux-platforms: '["_2_28-x64","2014-x64"]'
       test-notebooks: true
     secrets:
       pypi_password: ${{ secrets.pypi_password }}
-      
+
   python-build-workflow-main:
     if: github.ref == 'refs/heads/master' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags')
-    uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-package-python.yml@3f63de316255a285b0cac4c819d3d45649738999
+    uses: thewtex/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-package-python.yml@e15be287b1e1940b51e38fd6c8e0a32cfe629154
     with:
       python3-minor-versions: '["8","9","10","11"]'
       manylinux-platforms: '["_2_28-x64","2014-x64"]'

pyproject.toml

@@ -0,0 +1,114 @@
+[build-system]
+requires = ["scikit-build-core"]
+build-backend = "scikit_build_core.build"
+
+[project]
+name = "itk-elastix"
+version = "0.19.2"
+description = "Provides an ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images"
+readme = "README.md"
+license = {file = "LICENSE"}
+authors = [
+    { name = "Matthew M. McCormick", email = "matt.mccormick@kitware.com" },
+    { name = "ViktorvdValk", email = "viktorvandervalk@gmail.com" },
+    { name = "Niels Dekker", email = "N.Dekker@lumc.nl" },
+    { name = "Tom Birdsong" },
+    { name = "Konstantinos Ntatsis", email = "konstantinos.ntatsis323@gmail.com" },
+]
+keywords = [
+    "itk",
+    "elastix",
+    "registration",
+]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Developers",
+    "Intended Audience :: Education",
+    "Intended Audience :: Healthcare Industry",
+    "Intended Audience :: Science/Research",
+    "License :: OSI Approved :: Apache Software License",
+    "Operating System :: Android",
+    "Operating System :: MacOS",
+    "Operating System :: Microsoft :: Windows",
+    "Operating System :: POSIX",
+    "Operating System :: Unix",
+    "Programming Language :: C++",
+    "Programming Language :: Python",
+    "Topic :: Scientific/Engineering",
+    "Topic :: Scientific/Engineering :: Information Analysis",
+    "Topic :: Scientific/Engineering :: Medical Science Apps.",
+    "Topic :: Software Development :: Libraries",
+]
+requires-python = ">=3.8"
+dependencies = [
+    "itk>=5.4rc3",
+]
+
+[project.urls]
+Download = "https://github.com/InsightSoftwareConsortium/ITKElastix"
+Homepage = "https://github.com/InsightSoftwareConsortium/ITKElastix"
+
+[tool.scikit-build]
+# The versions of CMake to allow. If CMake is not present on the system or does
+# not pass this specifier, it will be downloaded via PyPI if possible. An empty
+# string will disable this check.
+cmake.version = ">=3.16.3"
+
+# A list of args to pass to CMake when configuring the project. Setting this in
+# config or envvar will override toml. See also ``cmake.define``.
+cmake.args = []
+
+# A table of defines to pass to CMake when configuring the project. Additive.
+cmake.define = {}
+
+# Verbose printout when building.
+cmake.verbose = true
+
+# The build type to use when building the project. Valid options are: "Debug",
+# "Release", "RelWithDebInfo", "MinSizeRel", "", etc.
+cmake.build-type = "Release"
+
+# The source directory to use when building the project. Currently only affects
+# the native builder (not the setuptools plugin).
+cmake.source-dir = "."
+
+# The versions of Ninja to allow. If Ninja is not present on the system or does
+# not pass this specifier, it will be downloaded via PyPI if possible. An empty
+# string will disable this check.
+ninja.version = ">=1.11"
+
+# The logging level to display, "DEBUG", "INFO", "WARNING", and "ERROR" are
+# possible options.
+logging.level = "INFO"
+
+# Files to include in the SDist even if they are skipped by default. Supports
+# gitignore syntax.
+sdist.include = []
+
+# Files to exclude from the SDist even if they are included by default. Supports
+# gitignore syntax.
+sdist.exclude = []
+
+# A list of license files to include in the wheel. Supports glob patterns.
+wheel.license-files = ["LICEN[CS]E*",]
+
+# Target the platlib or the purelib. If not set, the default is to target the
+# platlib if wheel.cmake is true, and the purelib otherwise.
+wheel.platlib = "false"
+
+# If CMake is less than this value, backport a copy of FindPython. Set to 0
+# disable this, or the empty string.
+backport.find-python = "3.26.1"
+
+# Select the editable mode to use. Can be "redirect" (default) or "inplace".
+editable.mode = "redirect"
+
+# Rebuild the project when the package is imported. The build-directory must be
+# set.
+editable.rebuild = false
+
+# If set, this will provide a method for backward compatibility.
+minimum-version = "0.8.2"
+
+# The build directory. Defaults to a temporary directory, but can be set.
+build-dir = "build/{wheel_tag}"

test/CMakeLists.txt

@@ -9,6 +9,8 @@ CreateTestDriver(Elastix "${Elastix-Test_LIBRARIES}" "${ElastixTests}")
 itk_add_test(NAME itkElastixRegistrationMethodTest
   COMMAND ElastixTestDriver
   --compareNumberOfPixelsTolerance 25
+  --compareRadiusTolerance 3
+  --compareIntensityTolerance 50
   --compare
     ${ITK_TEST_OUTPUT_DIR}/itkElastixRegistrationMethodTestOutput.mha
     DATA{Baseline/itkElastixRegistrationMethodTestOutput.mha}

wasm/typescript/package.json

@@ -51,7 +51,7 @@
     "@shoelace-style/shoelace": "^2.5.2",
     "@types/node": "^20.2.5",
     "ava": "^5.3.1",
-    "cypress": "^13.2.0",
+    "cypress": "^13.7.3",
     "debug": "^4.3.4",
     "itk-image-io": "^1.0.0-b.146",
     "rollup": "^3.9.0",
@@ -70,4 +70,4 @@
     "type": "git",
     "url": "https://github.com/InsightSoftwareConsortium/ITKElastix"
   }
-}
+}