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145 Open 174 Closed
145 Open 174 Closed
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Issues list

Pin ruff checks
#756 opened May 8, 2024 by cmungall
Document instructions for running the obographs-compliance suite documentation Improvements or additions to documentation
#751 opened May 5, 2024 by matentzn
3
Jaccard similarity differences when using information content
#746 opened May 1, 2024 by souzadevinicius
2
Run subset of tests in environment with no extras installed
#745 opened Apr 27, 2024 by cmungall
validate-mappings: NotImplementedError: ... NoneType bug Something isn't working
#742 opened Apr 25, 2024 by joeflack4
simple obo diffs creates duplicate Classes added
#732 opened Apr 3, 2024 by hrshdhgd
1
3
ValueSetExpander is too eager in using sqlite:obo as a default resolver
#718 opened Mar 15, 2024 by cmungall
adapter.entity_metadata_map("HP:0000001") with obo adapter causes DuplicateURIPrefixes error
#702 opened Feb 26, 2024 by matentzn
@hrshdhgd
7
Extended prefix map support
#699 opened Jan 26, 2024 by joeflack4
3
Hard coded CURIES in OAK code cause confusion when ontologies use different prefix maps
#698 opened Jan 20, 2024 by matentzn
3
.entities() typedef update
#690 opened Dec 19, 2023 by joeflack4
1
2
Dumpers and loaders: Separate concept of syntax and datamodel
#687 opened Dec 6, 2023 by cmungall
1
OAK Adapters vs. Invalid URI/CURIEs
#684 opened Dec 4, 2023 by glass-ships
5
relationships: Add warning/error when invalid predicates
#680 opened Nov 15, 2023 by joeflack4
2
Add an option to have a default count of 1 for all terms when calculating IC
#674 opened Nov 6, 2023 by cmungall
sort the return of 'ancestors' by the chain of relations such that the nodes are arranged in order from leaf to root good first issue Good for newcomers
#670 opened Oct 17, 2023 by realmarcin
Optimization: SqlImplementation.relationships_metadata() enhancement New feature or request
#660 opened Sep 27, 2023 by joeflack4
1
Add How to Cite in FAQ
#653 opened Sep 14, 2023 by amc-corey-cox
1
Allow use of SSSOM LiteralProfile as an output format for annotate
#644 opened Aug 24, 2023 by cmungall
When using semsimiam implementation, opaque errors are omitted if no predicates are passed`
#641 opened Aug 21, 2023 by cmungall
Resolve sqlite handling differences when using Semsimian and when on Windows
#638 opened Aug 18, 2023 by caufieldjh
expand value set command should allow for configurable materialized values
#622 opened Jul 31, 2023 by cmungall
A generic command that indents a TSV
#621 opened Jul 28, 2023 by hrshdhgd
implement termset_similarity in semsimian implementation
#620 opened Jul 21, 2023 by cmungall
@hrshdhgd
1
Add obsolesence reasons (and comments?) to obsoletes table? enhancement New feature or request
#618 opened Jul 20, 2023 by matentzn
@hrshdhgd
1
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