Skip to content

Issues: IKIM-Essen/uncovar

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

44 Open 89 Closed
44 Open 89 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add rules for generating report only with qc measures enhancement New feature or request
#606 opened Oct 25, 2023 by alethomas
-Oz generates a .vcf.gz!! todo
#570 opened Oct 12, 2022 by github-actions bot
Remove Masked polished sequence from reporting. RKI Only enhancement New feature or request invalid This doesn't seem right
#556 opened Aug 2, 2022 by alethomas
master and dev branch enhancement New feature or request
#538 opened May 11, 2022 by alethomas
1
Add a first init rule enhancement New feature or request
#537 opened May 10, 2022 by alethomas
@lenakinzel @vBassewitz
Include coverage plots in wastewater report bug Something isn't working
#518 opened Mar 28, 2022 by thomasbtf
Add csv table in report of all kallisto calls enhancement New feature or request
#517 opened Mar 28, 2022 by thomasbtf
generate report without found species diversity enhancement New feature or request
#514 opened Mar 24, 2022 by alethomas
automatically generate folders for data handling enhancement New feature or request
#509 opened Mar 23, 2022 by alethomas
newly initialized repo can't handle empty sample sheet bug Something isn't working
#508 opened Mar 23, 2022 by alethomas
Adjust structure of workflow for snakedeploy enhancement New feature or request paper
#506 opened Mar 23, 2022 by thomasbtf
Add more Illumina sequences to the CI environment enhancement New feature or request
#504 opened Mar 21, 2022 by thomasbtf
Add a minimum percentage of SARS-CoV-2 in the sample as criteria to create a pseudo assembly enhancement New feature or request
#497 opened Mar 14, 2022 by thomasbtf
Make number of lineages configurable in VOC table enhancement New feature or request
#494 opened Mar 3, 2022 by alethomas
Add CI check for VOC table enhancement New feature or request
#486 opened Feb 24, 2022 by alethomas
Add variant overview plot enhancement New feature or request
#485 opened Feb 24, 2022 by thomasbtf
@lenakinzel
1
To many Ns in final sequnces bug Something isn't working paper
#471 opened Feb 9, 2022 by thomasbtf
MultiQC naming bug Something isn't working
#469 opened Feb 9, 2022 by thomasbtf
Reduced size of variants over time plot bug Something isn't working
#468 opened Feb 9, 2022 by thomasbtf
Implement automatic primer resources for ARTIC v3 + v4 enhancement New feature or request
#432 opened Dec 23, 2021 by alethomas
Add CoVarPlot enhancement New feature or request
#430 opened Dec 22, 2021 by thomasbtf
Remove found species from overview table enhancement New feature or request
#415 opened Dec 17, 2021 by alethomas
Add flag if covid is not detected enhancement New feature or request
#384 opened Dec 8, 2021 by alethomas
@AKBrueggemann
Complete Documentation enhancement New feature or request paper
#376 opened Dec 6, 2021 by thomasbtf
1 of 26 tasks
@thomasbtf @alethomas
@AKBrueggemann @lenakinzel
1
Kallisto Consensus Sequences enhancement New feature or request
#371 opened Dec 2, 2021 by thomasbtf
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.