GitHub - ICRC-Models/HHCoM: Compartmental model of HIV and HPV heterosexual transmission, development of AIDS and cervical cancer, and interventions

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Name		Name	Last commit message	Last commit date
Latest commit History 1,638 Commits
Config		Config
OldVersions_Setup_LitReview		OldVersions_Setup_LitReview
Params		Params
SACEA		SACEA
resources/project		resources/project
.gitattributes		.gitattributes
.gitignore		.gitignore
DRIVEModel.prj		DRIVEModel.prj
PAF_070621.R		PAF_070621.R
PAFpaper_110421.R		PAFpaper_110421.R
README-model_description.txt		README-model_description.txt
README2-branch_tag_descriptions.txt		README2-branch_tag_descriptions.txt
abc_smc.m		abc_smc.m
age5To1.m		age5To1.m
allcomb.m		allcomb.m
artMinMax.m		artMinMax.m
artPopCov.m		artPopCov.m
bornAgeDieRisk.m		bornAgeDieRisk.m
calcDist.m		calcDist.m
calcWeights.m		calcWeights.m
calib1_lhs.m		calib1_lhs.m
calib2_runMultFutSims.m		calib2_runMultFutSims.m
calib2_runMultHistSims.m		calib2_runMultHistSims.m
calib2_sumll4sets.m		calib2_sumll4sets.m
calib2_sumll4sets_handCalib.m		calib2_sumll4sets_handCalib.m
cancelSlurmJobs.sh		cancelSlurmJobs.sh
catpad.m		catpad.m
createParamSet.m		createParamSet.m
createParamSet_16Apr20.m		createParamSet_16Apr20.m
createParamSet_handCalib.m		createParamSet_handCalib.m
debugTreatment_historicalSim.m		debugTreatment_historicalSim.m
debugTreatment_historicalSim_runthis.m		debugTreatment_historicalSim_runthis.m
even_sample.m		even_sample.m
futureSim.m		futureSim.m
genParamStruct.m		genParamStruct.m
historicalSim.m		historicalSim.m
hivNH.m		hivNH.m
hpvCCNH.m		hpvCCNH.m
hpvScreen.m		hpvScreen.m
hpvVaxCU.m		hpvVaxCU.m
hpvVaxLmtd.m		hpvVaxLmtd.m
hpvVaxSchool.m		hpvVaxSchool.m
idBestParamSets.m		idBestParamSets.m
idMissingSets.m		idMissingSets.m
idParamInPrior.m		idParamInPrior.m
idParamPosteriors.m		idParamPosteriors.m
idParamRanges.m		idParamRanges.m
idSizeMatrix.m		idSizeMatrix.m
lhsPatternSrch.m		lhsPatternSrch.m
lhsPatternSrch_prt2.m		lhsPatternSrch_prt2.m
likeFun.m		likeFun.m
likeFunPtrnSrch.m		likeFunPtrnSrch.m
likeFun_kSympCalib.m		likeFun_kSympCalib.m
loadUp2.m		loadUp2.m
loop_indices.sh		loop_indices.sh
loopingCEAOverScenarios_CISNET.m		loopingCEAOverScenarios_CISNET.m
loopingCEAOverScenarios_v2.m		loopingCEAOverScenarios_v2.m
loopingCISNETOverScenarios.m		loopingCISNETOverScenarios.m
mixInfect.m		mixInfect.m
modifiedhistoricalSim.m		modifiedhistoricalSim.m
ode4xtra.m		ode4xtra.m
parsave.m		parsave.m
runMultFutSims.sh		runMultFutSims.sh
runMultHistSims.sh		runMultHistSims.sh
runMultHistSims_Erisone.lsf		runMultHistSims_Erisone.lsf
run_ptrnSrch.sh		run_ptrnSrch.sh
showResults.m		showResults.m
showResults_multSims.m		showResults_multSims.m
showResults_multSims_CIs.m		showResults_multSims_CIs.m
slurm_abc.sbatch		slurm_abc.sbatch
slurm_batch.sbatch		slurm_batch.sbatch
slurm_idMissing.sbatch		slurm_idMissing.sbatch
slurm_idParamRanges.sbatch		slurm_idParamRanges.sbatch
slurm_lhs.sbatch		slurm_lhs.sbatch
slurm_runMultFutSims.sbatch		slurm_runMultFutSims.sbatch
slurm_runMultHistSims.sbatch		slurm_runMultHistSims.sbatch
slurm_sizeMatrix.sbatch		slurm_sizeMatrix.sbatch
sumall.m		sumall.m
sympCalibration.m		sympCalibration.m
symptomaticDetection.m		symptomaticDetection.m
transferDirectories.sh		transferDirectories.sh
vaxCEA.m		vaxCEA.m
vaxCEA_multSims_CISNET.m		vaxCEA_multSims_CISNET.m
vaxCEA_multSims_CISNET_UWRuns.m		vaxCEA_multSims_CISNET_UWRuns.m
vaxCEA_multSims_CISNETsces.m		vaxCEA_multSims_CISNETsces.m
vaxCEA_multSims_CIs.m		vaxCEA_multSims_CIs.m
vaxCEA_multSims_CIs_IPVC.m		vaxCEA_multSims_CIs_IPVC.m
vaxCEA_multSims_CIs_SACEA.m		vaxCEA_multSims_CIs_SACEA.m
vaxCEA_multSims_CIs_WHO.m		vaxCEA_multSims_CIs_WHO.m
vaxCEA_multSims_CIs_modScreen.m		vaxCEA_multSims_CIs_modScreen.m
vaxCEA_multSims_CIs_pHIV.m		vaxCEA_multSims_CIs_pHIV.m
vaxCEA_multSims_IPVCsces.m		vaxCEA_multSims_IPVCsces.m
vaxCEA_multSims_SACEA_CH.m		vaxCEA_multSims_SACEA_CH.m
vaxCEA_multSims_SAsces.m		vaxCEA_multSims_SAsces.m
vaxCEA_multSims_WHOsces.m		vaxCEA_multSims_WHOsces.m
vaxEfficacyBetaProb_3Dose.R		vaxEfficacyBetaProb_3Dose.R
vlAdv.m		vlAdv.m
vmmc.m		vmmc.m
weed_output_files.sh		weed_output_files.sh