ICI3D R tutorials

This repository contains tutorials for the MMED and DAIDD clinics.

Name		Name	Last commit message	Last commit date
Latest commit History 196 Commits
SimpleStochastic		SimpleStochastic
dynamicalFeverShiny		dynamicalFeverShiny
gillespie		gillespie
git_push		git_push
pipelines		pipelines
sampling_JD		sampling_JD
.Rapp.history		.Rapp.history
.gitignore		.gitignore
DerivExponential.R		DerivExponential.R
HetSIR.R		HetSIR.R
HetSIR_functions.Rdata		HetSIR_functions.Rdata
ICI3D_Ex1_StochasticSpillover.R		ICI3D_Ex1_StochasticSpillover.R
ICI3D_Example_binomialDistribution.R		ICI3D_Example_binomialDistribution.R
ICI3D_Example_chainBinom.R		ICI3D_Example_chainBinom.R
ICI3D_Lab1_ODEmodels.R		ICI3D_Lab1_ODEmodels.R
ICI3D_Lab2_Heterogeneity.R		ICI3D_Lab2_Heterogeneity.R
ICI3D_Lab3_EpiStudyDesign.R		ICI3D_Lab3_EpiStudyDesign.R
ICI3D_Lab3_EpiStudyDesign.answers.R		ICI3D_Lab3_EpiStudyDesign.answers.R
ICI3D_Lab4_RCT.R		ICI3D_Lab4_RCT.R
ICI3D_Lab5_introLikelihood.R		ICI3D_Lab5_introLikelihood.R
ICI3D_Lab5a_introLikelihoodPlusRejectionP.R		ICI3D_Lab5a_introLikelihoodPlusRejectionP.R
ICI3D_Lab6_HetSIR_exercise.R		ICI3D_Lab6_HetSIR_exercise.R
ICI3D_Lab6_MLE_SIV_HIV.R		ICI3D_Lab6_MLE_SIV_HIV.R
ICI3D_Lab7_MCMC-Binomial.R		ICI3D_Lab7_MCMC-Binomial.R
ICI3D_Lab8_MCMC-SI_HIV.R		ICI3D_Lab8_MCMC-SI_HIV.R
ICI3D_Lab_SampDistrVariability.R		ICI3D_Lab_SampDistrVariability.R
ICI3D_RTutorial_0.R		ICI3D_RTutorial_0.R
ICI3D_RTutorial_1.R		ICI3D_RTutorial_1.R
ICI3D_RTutorial_1.answers.R		ICI3D_RTutorial_1.answers.R
ICI3D_RTutorial_2.R		ICI3D_RTutorial_2.R
ICI3D_RTutorial_2.answers.R		ICI3D_RTutorial_2.answers.R
ICI3D_RTutorial_3.R		ICI3D_RTutorial_3.R
ICI3D_RTutorial_4_VisualizingData.R		ICI3D_RTutorial_4_VisualizingData.R
ICI3D_RTutorial_5_DataCleaning.R		ICI3D_RTutorial_5_DataCleaning.R
ICI3D_RTutorial_5_DataCleaning.answers.R		ICI3D_RTutorial_5_DataCleaning.answers.R
ICI3D_RtvTutorial_4.R		ICI3D_RtvTutorial_4.R
ICI3D_RtvTutorial_4.answers.R		ICI3D_RtvTutorial_4.answers.R
ICI3D_spillover_introductions.R		ICI3D_spillover_introductions.R
MCMC_SI_runs.Rdata		MCMC_SI_runs.Rdata
Makefile		Makefile
Mutxt.Rdata		Mutxt.Rdata
ParticipatoryDynamicModel_TB.R		ParticipatoryDynamicModel_TB.R
README.md		README.md
RTutorials.Rproj		RTutorials.Rproj
batch.md		batch.md
batch.pl		batch.pl
binomialDistribution.R		binomialDistribution.R
boxcars.R		boxcars.R
content.mk		content.mk
dynamicalFever.Rproj		dynamicalFever.Rproj
dynamicalFeverData.Rdata		dynamicalFeverData.Rdata
dynamicalFeverModelScript.R		dynamicalFeverModelScript.R
dynamicalFeverScript.R		dynamicalFeverScript.R
dynamicalFeverSlideset.pdf		dynamicalFeverSlideset.pdf
hetSIR.Rdata		hetSIR.Rdata
hetSIRfxnMASTER.R		hetSIRfxnMASTER.R
hetero_play.R		hetero_play.R
hivAndFertility.R		hivAndFertility.R
hivAndFertilityExtension.R		hivAndFertilityExtension.R
introRstudio.R		introRstudio.R
librariesNeeded.R		librariesNeeded.R
particCodingDynMod2016.R		particCodingDynMod2016.R
particCoding_Rabies2017.R		particCoding_Rabies2017.R
participatoryCoding2016.R		participatoryCoding2016.R
participatoryCoding_HIVTB.R		participatoryCoding_HIVTB.R
participatoryCoding_IRSmalaria2014.R		participatoryCoding_IRSmalaria2014.R
participatoryCoding_MalariaITN_2017.R		participatoryCoding_MalariaITN_2017.R
participatoryDesign2021.R		participatoryDesign2021.R
projectCode.R		projectCode.R
seir.R		seir.R
seir.w.seasonal.R		seir.w.seasonal.R
seir_cumInc.R		seir_cumInc.R

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