Sub-project: effect of evolution on projections, some edits #127
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saraloo
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Add preprocessing script that recodes all variants pre-Omicron to OMICRON.
This recoding is for setting up a R17 phase 3 run with a variant structure (including BA2/2.12.1, BA4/BA5, BQ1, XBB) sub-lineages as separate variants.
Reads in
seirfiles from a resume and rewrites to the continued resumeinitfiles.Can recode into any variant by changing the flag
--recode-variant.