Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
feat: Onboard World Bank WDI dataset (#198)
- Loading branch information
1 parent
d766547
commit cbad321
Showing
22 changed files
with
1,902 additions
and
0 deletions.
There are no files selected for viewing
42 changes: 42 additions & 0 deletions
42
datasets/world_bank_wdi/_images/run_csv_transform_kub/Dockerfile
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,42 @@ | ||
# Copyright 2021 Google LLC | ||
# | ||
# Licensed under the Apache License, Version 2.0 (the "License"); | ||
# you may not use this file except in compliance with the License. | ||
# You may obtain a copy of the License at | ||
# | ||
# http://www.apache.org/licenses/LICENSE-2.0 | ||
# | ||
# Unless required by applicable law or agreed to in writing, software | ||
# distributed under the License is distributed on an "AS IS" BASIS, | ||
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
# See the License for the specific language governing permissions and | ||
# limitations under the License. | ||
|
||
# The base image for this build | ||
FROM python:3.8 | ||
|
||
# Allow statements and log messages to appear in Cloud logs | ||
ENV PYTHONUNBUFFERED True | ||
|
||
RUN apt-get -y update && apt-get install -y apt-transport-https ca-certificates gnupg &&\ | ||
echo "deb https://packages.cloud.google.com/apt cloud-sdk main" | tee -a /etc/apt/sources.list.d/google-cloud-sdk.list &&\ | ||
curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add - &&\ | ||
apt-get -y update && apt-get install -y google-cloud-sdk | ||
|
||
# Copy the requirements file into the image | ||
COPY requirements.txt ./ | ||
|
||
# Install the packages specified in the requirements file | ||
RUN python3 -m pip install --no-cache-dir -r requirements.txt | ||
|
||
# The WORKDIR instruction sets the working directory for any RUN, CMD, | ||
# ENTRYPOINT, COPY and ADD instructions that follow it in the Dockerfile. | ||
# If the WORKDIR doesn’t exist, it will be created even if it’s not used in | ||
# any subsequent Dockerfile instruction | ||
WORKDIR /custom | ||
|
||
# Copy the specific data processing script/s in the image under /custom/* | ||
COPY ./csv_transform.py . | ||
|
||
# Command to run the data processing script when the container is run | ||
CMD ["python3", "csv_transform.py"] |
149 changes: 149 additions & 0 deletions
149
datasets/world_bank_wdi/_images/run_csv_transform_kub/csv_transform.py
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,149 @@ | ||
# Copyright 2021 Google LLC | ||
# | ||
# Licensed under the Apache License, Version 2.0 (the "License"); | ||
# you may not use this file except in compliance with the License. | ||
# You may obtain a copy of the License at | ||
# | ||
# http://www.apache.org/licenses/LICENSE-2.0 | ||
# | ||
# Unless required by applicable law or agreed to in writing, software | ||
# distributed under the License is distributed on an "AS IS" BASIS, | ||
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
# See the License for the specific language governing permissions and | ||
# limitations under the License. | ||
|
||
|
||
import datetime | ||
import json | ||
import logging | ||
import math | ||
import os | ||
import pathlib | ||
import subprocess | ||
import typing | ||
|
||
import pandas as pd | ||
from google.cloud import storage | ||
|
||
|
||
def main( | ||
source_url: str, | ||
source_file: pathlib.Path, | ||
column_name: str, | ||
target_file: pathlib.Path, | ||
target_gcs_bucket: str, | ||
target_gcs_path: str, | ||
headers: typing.List[str], | ||
rename_mappings: dict, | ||
pipeline_name: str, | ||
) -> None: | ||
|
||
logging.info( | ||
f"World Bank WDI {pipeline_name} process started at " | ||
+ str(datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")) | ||
) | ||
|
||
logging.info("Creating 'files' folder") | ||
pathlib.Path("./files").mkdir(parents=True, exist_ok=True) | ||
|
||
logging.info(f"Downloading file {source_url}") | ||
download_file(source_url, source_file) | ||
|
||
logging.info(f"Opening file {source_file}") | ||
df = pd.read_csv(source_file, skip_blank_lines=True) | ||
|
||
logging.info(f"Transforming {source_file} ... ") | ||
|
||
logging.info(f"Transform: Dropping column {column_name} ...") | ||
delete_column(df, column_name) | ||
|
||
logging.info(f"Transform: Renaming columns for {pipeline_name} ...") | ||
rename_headers(df, rename_mappings) | ||
|
||
if pipeline_name == "series_time" or pipeline_name == "footnotes": | ||
logging.info(f"Transform: Extracting year for {pipeline_name} ...") | ||
df["year"] = df["year"].apply(extract_year) | ||
|
||
if pipeline_name == "country_summary": | ||
logging.info("Transform: Creating a new column ...") | ||
df["latest_water_withdrawal_data"] = "" | ||
|
||
logging.info("Transform: converting to integer ... ") | ||
df["latest_industrial_data"] = df["latest_industrial_data"].apply( | ||
convert_to_integer_string | ||
) | ||
df["latest_trade_data"] = df["latest_trade_data"].apply( | ||
convert_to_integer_string | ||
) | ||
|
||
logging.info(f"Transform: Reordering headers for {pipeline_name} ...") | ||
df = df[headers] | ||
|
||
logging.info(f"Saving to output file.. {target_file}") | ||
try: | ||
save_to_new_file(df, file_path=str(target_file)) | ||
except Exception as e: | ||
logging.error(f"Error saving output file: {e}.") | ||
|
||
logging.info( | ||
f"Uploading output file to.. gs://{target_gcs_bucket}/{target_gcs_path}" | ||
) | ||
upload_file_to_gcs(target_file, target_gcs_bucket, target_gcs_path) | ||
|
||
logging.info( | ||
f"World Bank Health Population {pipeline_name} process completed at " | ||
+ str(datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")) | ||
) | ||
|
||
|
||
def download_file(source_url: str, source_file: pathlib.Path) -> None: | ||
subprocess.check_call(["gsutil", "cp", f"{source_url}", f"{source_file}"]) | ||
|
||
|
||
def rename_headers(df: pd.DataFrame, rename_mappings: dict) -> None: | ||
df.rename(columns=rename_mappings, inplace=True) | ||
|
||
|
||
def delete_column(df: pd.DataFrame, column_name: str) -> None: | ||
df = df.drop(column_name, axis=1, inplace=True) | ||
|
||
|
||
def extract_year(string_val: str) -> str: | ||
# example : YR2021 | ||
return string_val[-4:] | ||
|
||
|
||
def save_to_new_file(df: pd.DataFrame, file_path: str) -> None: | ||
df.to_csv(file_path, index=False) | ||
|
||
|
||
def convert_to_integer_string(input: typing.Union[str, float]) -> str: | ||
str_val = "" | ||
if not input or (math.isnan(input)): | ||
str_val = "" | ||
else: | ||
str_val = str(int(round(input, 0))) | ||
return str_val | ||
|
||
|
||
def upload_file_to_gcs(file_path: pathlib.Path, gcs_bucket: str, gcs_path: str) -> None: | ||
storage_client = storage.Client() | ||
bucket = storage_client.bucket(gcs_bucket) | ||
blob = bucket.blob(gcs_path) | ||
blob.upload_from_filename(file_path) | ||
|
||
|
||
if __name__ == "__main__": | ||
logging.getLogger().setLevel(logging.INFO) | ||
|
||
main( | ||
source_url=os.environ["SOURCE_URL"], | ||
source_file=pathlib.Path(os.environ["SOURCE_FILE"]).expanduser(), | ||
column_name=os.environ["COLUMN_TO_REMOVE"], | ||
target_file=pathlib.Path(os.environ["TARGET_FILE"]).expanduser(), | ||
target_gcs_bucket=os.environ["TARGET_GCS_BUCKET"], | ||
target_gcs_path=os.environ["TARGET_GCS_PATH"], | ||
headers=json.loads(os.environ["CSV_HEADERS"]), | ||
rename_mappings=json.loads(os.environ["RENAME_MAPPINGS"]), | ||
pipeline_name=os.environ["PIPELINE_NAME"], | ||
) |
2 changes: 2 additions & 0 deletions
2
datasets/world_bank_wdi/_images/run_csv_transform_kub/requirements.txt
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,2 @@ | ||
google-cloud-storage | ||
pandas |
39 changes: 39 additions & 0 deletions
39
datasets/world_bank_wdi/_terraform/country_series_definitions_pipeline.tf
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,39 @@ | ||
/** | ||
* Copyright 2021 Google LLC | ||
* | ||
* Licensed under the Apache License, Version 2.0 (the "License"); | ||
* you may not use this file except in compliance with the License. | ||
* You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
|
||
|
||
resource "google_bigquery_table" "world_bank_wdi_country_series_definitions" { | ||
project = var.project_id | ||
dataset_id = "world_bank_wdi" | ||
table_id = "country_series_definitions" | ||
|
||
description = "Country Series Definition table" | ||
|
||
|
||
|
||
|
||
depends_on = [ | ||
google_bigquery_dataset.world_bank_wdi | ||
] | ||
} | ||
|
||
output "bigquery_table-world_bank_wdi_country_series_definitions-table_id" { | ||
value = google_bigquery_table.world_bank_wdi_country_series_definitions.table_id | ||
} | ||
|
||
output "bigquery_table-world_bank_wdi_country_series_definitions-id" { | ||
value = google_bigquery_table.world_bank_wdi_country_series_definitions.id | ||
} |
39 changes: 39 additions & 0 deletions
39
datasets/world_bank_wdi/_terraform/country_summary_pipeline.tf
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,39 @@ | ||
/** | ||
* Copyright 2021 Google LLC | ||
* | ||
* Licensed under the Apache License, Version 2.0 (the "License"); | ||
* you may not use this file except in compliance with the License. | ||
* You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
|
||
|
||
resource "google_bigquery_table" "world_bank_wdi_country_summary" { | ||
project = var.project_id | ||
dataset_id = "world_bank_wdi" | ||
table_id = "country_summary" | ||
|
||
description = "Country Summary table" | ||
|
||
|
||
|
||
|
||
depends_on = [ | ||
google_bigquery_dataset.world_bank_wdi | ||
] | ||
} | ||
|
||
output "bigquery_table-world_bank_wdi_country_summary-table_id" { | ||
value = google_bigquery_table.world_bank_wdi_country_summary.table_id | ||
} | ||
|
||
output "bigquery_table-world_bank_wdi_country_summary-id" { | ||
value = google_bigquery_table.world_bank_wdi_country_summary.id | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,39 @@ | ||
/** | ||
* Copyright 2021 Google LLC | ||
* | ||
* Licensed under the Apache License, Version 2.0 (the "License"); | ||
* you may not use this file except in compliance with the License. | ||
* You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
|
||
|
||
resource "google_bigquery_table" "world_bank_wdi_footnotes" { | ||
project = var.project_id | ||
dataset_id = "world_bank_wdi" | ||
table_id = "footnotes" | ||
|
||
description = "Footnotes table" | ||
|
||
|
||
|
||
|
||
depends_on = [ | ||
google_bigquery_dataset.world_bank_wdi | ||
] | ||
} | ||
|
||
output "bigquery_table-world_bank_wdi_footnotes-table_id" { | ||
value = google_bigquery_table.world_bank_wdi_footnotes.table_id | ||
} | ||
|
||
output "bigquery_table-world_bank_wdi_footnotes-id" { | ||
value = google_bigquery_table.world_bank_wdi_footnotes.id | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,28 @@ | ||
/** | ||
* Copyright 2021 Google LLC | ||
* | ||
* Licensed under the Apache License, Version 2.0 (the "License"); | ||
* you may not use this file except in compliance with the License. | ||
* You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
|
||
|
||
provider "google" { | ||
project = var.project_id | ||
impersonate_service_account = var.impersonating_acct | ||
region = var.region | ||
} | ||
|
||
data "google_client_openid_userinfo" "me" {} | ||
|
||
output "impersonating-account" { | ||
value = data.google_client_openid_userinfo.me.email | ||
} |
39 changes: 39 additions & 0 deletions
39
datasets/world_bank_wdi/_terraform/series_summary_pipeline.tf
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,39 @@ | ||
/** | ||
* Copyright 2021 Google LLC | ||
* | ||
* Licensed under the Apache License, Version 2.0 (the "License"); | ||
* you may not use this file except in compliance with the License. | ||
* You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
|
||
|
||
resource "google_bigquery_table" "world_bank_wdi_series_summary" { | ||
project = var.project_id | ||
dataset_id = "world_bank_wdi" | ||
table_id = "series_summary" | ||
|
||
description = "Series Summary table" | ||
|
||
|
||
|
||
|
||
depends_on = [ | ||
google_bigquery_dataset.world_bank_wdi | ||
] | ||
} | ||
|
||
output "bigquery_table-world_bank_wdi_series_summary-table_id" { | ||
value = google_bigquery_table.world_bank_wdi_series_summary.table_id | ||
} | ||
|
||
output "bigquery_table-world_bank_wdi_series_summary-id" { | ||
value = google_bigquery_table.world_bank_wdi_series_summary.id | ||
} |
Oops, something went wrong.