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23 Open 148 Closed
23 Open 148 Closed
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Issues list

Clarification on reads argument
#425 opened Apr 27, 2024 by cjw85
2
mouse data
#424 opened Apr 11, 2024 by mocherry
1
Transcripts identified by Bambu have a CPM or count value of 0 in all samples
#422 opened Apr 10, 2024 by yuyun-zhang
7
question on multisampling
#421 opened Apr 4, 2024 by sparthib
8
Is Bambu suitable for PB Kinnex?
#420 opened Apr 3, 2024 by Tang-pro
2
recommended quality control for input BAM files
#418 opened Mar 23, 2024 by sparthib
1
Barcode demultiplexing on the long-reads alignment?
#417 opened Mar 21, 2024 by ShaowenJ
4
Errors and warnings explanation
#416 opened Mar 8, 2024 by zhangkn3
2
Interpreting warning messages in discovery only mode
#415 opened Feb 28, 2024 by sparthib
2
BiocParallel error when putting multiple .bam files as inputs for reads
#414 opened Feb 28, 2024 by TingQi2020
1
question about transcriptome/genome
#413 opened Jan 23, 2024 by huawen-poppy
2
why multiple .bam files(>=7) cannot work
#411 opened Jan 10, 2024 by Yumy526
14
singe exon transcript strand cDNA versus direct RNA nanopore protocol
#409 opened Jan 9, 2024 by tderrien
2
dplyr::summarise message
#408 opened Jan 8, 2024 by mikelove
XGBoost model serializaiton message
#407 opened Jan 8, 2024 by mikelove
Explanation of txClassDescriptions and error message for large bam file.
#402 opened Nov 9, 2023 by apsteinberg
23
can you guys make bambu run on command line
#398 opened Oct 30, 2023 by yuukiiwa
dplyr 1.1.0. The deprecated feature was likely used in the bambu package. Warning message
#380 opened Jun 30, 2023 by Michael-m6A
3
Not working for UCSC fasta and annotation enhancement New feature or request
#359 opened Mar 6, 2023 by alexyfyf
1
Inconsistent read counts with transcript isoforms ending at different locations (unsupported by reads)
#284 opened Jul 8, 2022 by gringer
@cying111
5
Inconsistent read counts within polycistronic transcripts with near-constant expression enhancement New feature or request
#282 opened Jun 30, 2022 by gringer
2
Is it possible to get transcript coverage estimates from Bambu? enhancement New feature or request
#248 opened Mar 14, 2022 by bernardo-heberle
1
Illustrate the use of the compareTranscript() function documentation Improvements or additions to documentation
#178 opened Dec 21, 2020 by yuukiiwa
ProTip! Updated in the last three days: updated:>2024-05-07.